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Clc03G03500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G03500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPectinesterase
Genome locationClcChr03:3528859..3529359
RNA-Seq ExpressionClc03G03500
SyntenyClc03G03500
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0030599 - pectinesterase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055286.1 putative pectinesterase/pectinesterase inhibitor 47 [Cucumis melo var. makuwa]2.8e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

KAG6572387.1 putative pectinesterase/pectinesterase inhibitor 7, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2844.97Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MAQ L+FENS EPQN Q + V+D+A H  YYN                           V+FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI   K  V+I+L  PWR+YST+              GW+  E VP+   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

TYJ99209.1 pectinesterase 2-like [Cucumis melo var. makuwa]2.8e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

XP_008465578.1 PREDICTED: pectinesterase 2-like, partial [Cucumis melo]2.8e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

XP_023511664.1 probable pectinesterase/pectinesterase inhibitor 7 [Cucurbita pepo subsp. pepo]3.0e-2844.97Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MAQ L+FENS EPQN Q + V+D+A H  YY+                           V+FIFG+G A+FQDCNIYAR+  + I VTAQSK++ MS+SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI   K NV+I+L  PWR+YST+              GW+    VP+   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

TrEMBL top hitse value%identityAlignment
A0A1S3CP42 Pectinesterase1.3e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

A0A5A7ULX7 Pectinesterase1.3e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

A0A5D3BJU4 Pectinesterase1.3e-2948.52Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MA+SLTFENS  PQN Q + V D A+H AYY                           +V+FIFG G  MFQDCNIYAR+ +NSI VTAQSKD L S SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI+  K NV++FL  PWRQYS +              GW+E + VPV   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

A0A6J1GM54 Pectinesterase5.6e-2844.38Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MAQ L+FENS EPQN Q + V+D+A H  YY+                           V+FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EI   K  V+I+L  PWR+YST+              GW+  E VP+   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

A0A6J1HZD2 Pectinesterase5.6e-2844.97Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG
        MAQ L+FENS EPQN Q + V+D+A H  YY+                           V+FIFG+G A+FQDCNIYAR+  + I VTAQSK++ +S+SG
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYYN---------------------------VNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSG

Query:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN
        FS QNC VTVS EIA  K  V+I+L  PWR YST+              GW+  E VP+   ++ EFNN
Subjt:  FSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELEEVPVVTTYF-EFNN

SwissProt top hitse value%identityAlignment
O04887 Pectinesterase 22.5e-0939.74Show/hide
Query:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS
        Y  V+FIFG+   + Q+CNI+AR   N  N +TAQ + +    +G    NC VT + ++ P + +V+ FL  PW+QYS
Subjt:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS

O22149 Probable pectinesterase/pectinesterase inhibitor 173.3e-0933.91Show/hide
Query:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELE
        Y  V+FIFG+  A+ Q+CNI+AR   +  N +TAQ + +    +G    N  VT + ++ P  G+ + +L  PWRQYS                GWLE +
Subjt:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELE

Query:  EVPVVTT--YFEFNN
            + T  Y EF N
Subjt:  EVPVVTT--YFEFNN

Q4PT34 Probable pectinesterase 566.0e-1143.9Show/hide
Query:  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGWLE
        V+FIFG   A+FQ C I AR   I  +  +TAQS++E  + SGFS Q C ++ S ++ P KG V+ FL  PWR +S + ++E
Subjt:  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGWLE

Q7Y201 Probable pectinesterase/pectinesterase inhibitor 138.6e-1026.59Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK
        MAQS+ F N+  P+  Q + +   ++                    H  YY        ++FIFG   A+FQ+CNI+ R  +      VTAQ + +    
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK

Query:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN
        +GF   NC +  ++++ P K   + +L  PW+ YS               +GWL  +E    + T Y+ E+NN
Subjt:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN

Q9FF77 Probable pectinesterase/pectinesterase inhibitor 471.9e-0926.74Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK
        +A  +TF N+  P+  Q + V ++A+   +Y                            ++FIFG+  A+FQ+CNIYAR  + N    VTA  + +   K
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK

Query:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN
        +G S  NC +  + ++A    +   FL  PW+ YS               +GWLE      + T  Y E++N
Subjt:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN

Arabidopsis top hitse value%identityAlignment
AT1G11370.1 Pectin lyase-like superfamily protein4.3e-1243.9Show/hide
Query:  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGWLE
        V+FIFG   A+FQ C I AR   I  +  +TAQS++E  + SGFS Q C ++ S ++ P KG V+ FL  PWR +S + ++E
Subjt:  VNFIFGSGFAMFQDCNIYARI--INNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGWLE

AT2G26450.1 Plant invertase/pectin methylesterase inhibitor superfamily6.1e-1126.59Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK
        MAQS+ F N+  P+  Q + +   ++                    H  YY        ++FIFG   A+FQ+CNI+ R  +      VTAQ + +    
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHAN--------------------HVAYY-------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK

Query:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN
        +GF   NC +  ++++ P K   + +L  PW+ YS               +GWL  +E    + T Y+ E+NN
Subjt:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEV--PVVTTYF-EFNN

AT2G45220.1 Plant invertase/pectin methylesterase inhibitor superfamily2.3e-1033.91Show/hide
Query:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELE
        Y  V+FIFG+  A+ Q+CNI+AR   +  N +TAQ + +    +G    N  VT + ++ P  G+ + +L  PWRQYS                GWLE +
Subjt:  YYNVNFIFGSGFAMFQDCNIYARIINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTI--------------GWLELE

Query:  EVPVVTT--YFEFNN
            + T  Y EF N
Subjt:  EVPVVTT--YFEFNN

AT4G02330.1 Plant invertase/pectin methylesterase inhibitor superfamily6.8e-1031.03Show/hide
Query:  YYNVNFIFGSGFAMFQDCNIYAR-IINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLEL
        Y  V+FIFG+   +FQDCN+Y R  + N  N +TAQ + +    +G S  NC +  + ++      V+ +L  PW++YS               +GW E 
Subjt:  YYNVNFIFGSGFAMFQDCNIYAR-IINNSIN-VTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLEL

Query:  EEVPVVTT--YFEFNN
             ++T  Y E+NN
Subjt:  EEVPVVTT--YFEFNN

AT5G04970.1 Plant invertase/pectin methylesterase inhibitor superfamily1.4e-1026.74Show/hide
Query:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK
        +A  +TF N+  P+  Q + V ++A+   +Y                            ++FIFG+  A+FQ+CNIYAR  + N    VTA  + +   K
Subjt:  MAQSLTFENSVEPQNCQVMVVVDHANHVAYY---------------------------NVNFIFGSGFAMFQDCNIYAR--IINNSINVTAQSKDELMSK

Query:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN
        +G S  NC +  + ++A    +   FL  PW+ YS               +GWLE      + T  Y E++N
Subjt:  SGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYS--------------TIGWLELEEVPVVTT--YFEFNN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAATCGCTAACCTTCGAGAACTCAGTCGAACCTCAAAACTGCCAAGTAATGGTTGTTGTTGACCATGCCAACCATGTTGCATATTACAACGTCAACTTTATTTT
TGGAAGTGGGTTTGCTATGTTCCAAGACTGTAATATATACGCTCGTATAATCAACAATTCCATCAACGTCACTGCACAATCAAAAGATGAACTAATGTCCAAAAGTGGCT
TCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGGATGG
TTGGAGTTGGAAGAGGTACCAGTAGTAACTACTTATTTTGAGTTTAACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACAATCGCTAACCTTCGAGAACTCAGTCGAACCTCAAAACTGCCAAGTAATGGTTGTTGTTGACCATGCCAACCATGTTGCATATTACAACGTCAACTTTATTTT
TGGAAGTGGGTTTGCTATGTTCCAAGACTGTAATATATACGCTCGTATAATCAACAATTCCATCAACGTCACTGCACAATCAAAAGATGAACTAATGTCCAAAAGTGGCT
TCTCCCGTCAAAACTGTATTGTCACGGTTTCGCAGGAGATAGCGCCCAAGAAGGGCAATGTTAGGATCTTTCTAGATTGGCCATGGAGACAATATTCAACTATTGGATGG
TTGGAGTTGGAAGAGGTACCAGTAGTAACTACTTATTTTGAGTTTAACAATTGA
Protein sequenceShow/hide protein sequence
MAQSLTFENSVEPQNCQVMVVVDHANHVAYYNVNFIFGSGFAMFQDCNIYARIINNSINVTAQSKDELMSKSGFSRQNCIVTVSQEIAPKKGNVRIFLDWPWRQYSTIGW
LELEEVPVVTTYFEFNN