CuGenDBv2

Gene ID	Clc03G03600
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	pentatricopeptide repeat-containing protein At5g50280, chloroplastic
Genome location	ClcChr03:3643137..3643909
RNA-Seq Expression	Clc03G03600
Synteny	Clc03G03600
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055291.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

5.1e-29

66.67

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++K+GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

TYJ99215.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

1.5e-28

65.79

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++++GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

XP_004152584.2 pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucumis sativus]

1.9e-28

64.91

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLK+PQLLQEMA  +LKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++K+GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

XP_008439140.1 PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Cucumis melo]

1.5e-28

65.79

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++++GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

XP_038877040.1 pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Benincasa hispida]

5.1e-29

66.67

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKLRSILDV L+TK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++K+GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LWH7 Uncharacterized protein

9.4e-29

64.91

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLK+PQLLQEMA  +LKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++K+GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

A0A1S3AY38 pentatricopeptide repeat-containing protein At5g50280, chloroplastic

7.2e-29

65.79

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++++GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

A0A5A7UP11 Pentatricopeptide repeat-containing protein

2.5e-29

66.67

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++K+GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

A0A5D3BLK1 Pentatricopeptide repeat-containing protein

7.2e-29

65.79

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQHLKMPQLLQEMA  ELKPDSV Y TMIYAFV                         SYQKL+SILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT
        K++++GKKD+FWKT
Subjt:  KSRKEGKKDKFWKT

A0A6J1C7V4 pentatricopeptide repeat-containing protein At5g50280, chloroplastic

1.8e-27

59.38

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQH KMPQLLQEMA  ELKPDSV Y TMIYA+V                         SYQKLR+ILDV LATK+RKDK+AILGIINSKMGMV
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVH------------------------SYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWKT-GESIKAKRKSQLK
        K++K+GKKD+FWK   + +K +R S ++
Subjt:  KSRKEGKKDKFWKT-GESIKAKRKSQLK

SwissProt top hits

e value

%identity

Alignment

Q9FGR7 Pentatricopeptide repeat-containing protein At5g50280, chloroplastic

6.7e-24

54.87

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Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFV------------------------HSYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQ  K+PQLL+EMA L LKPDS+ Y TMIYAFV                         SY+KLR+IL+    TK+RKDK AILGIINSK G V
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFV------------------------HSYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWK
        K++ +GKKD+FWK
Subjt:  KSRKEGKKDKFWK

Arabidopsis top hits

e value

%identity

Alignment

AT5G50280.1 Pentatricopeptide repeat (PPR) superfamily protein

4.8e-25

54.87

Show/hide

Query:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFV------------------------HSYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV
        MNAYA+GGQ  K+PQLL+EMA L LKPDS+ Y TMIYAFV                         SY+KLR+IL+    TK+RKDK AILGIINSK G V
Subjt:  MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFV------------------------HSYQKLRSILDVNLATKSRKDKNAILGIINSKMGMV

Query:  KSRKEGKKDKFWK
        K++ +GKKD+FWK
Subjt:  KSRKEGKKDKFWK

Sequences

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CDS sequence

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ATGAATGCATATGCTAAGGGAGGCCAACATCTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGTTTTGGAATTAAAACCCGACTCCGTTGCTTATTTGACCATGATTTA
CGCCTTCGTACATTCATACCAAAAACTTAGATCAATCTTGGATGTAAACCTTGCTACAAAGAGCAGGAAAGACAAGAATGCCATTCTTGGTATAATAAACAGCAAAATGG
GTATGGTGAAATCTAGGAAGGAGGGCAAGAAAGATAAGTTTTGGAAGACAGGAGAAAGCATTAAAGCAAAGAGAAAATCTCAACTGAAAAATGATCCCTAA

mRNA sequence

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Protein sequence

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MNAYAKGGQHLKMPQLLQEMAVLELKPDSVAYLTMIYAFVHSYQKLRSILDVNLATKSRKDKNAILGIINSKMGMVKSRKEGKKDKFWKTGESIKAKRKSQLKNDP

Clc03G03600 (gene) of Watermelon (cordophanus) v2 genome