; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G03660 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G03660
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRPM1-interacting protein 4-like
Genome locationClcChr03:3686468..3689370
RNA-Seq ExpressionClc03G03660
SyntenyClc03G03660
Gene Ontology termsGO:0005886 - plasma membrane (cellular component)
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652616.1 hypothetical protein Csa_013594 [Cucumis sativus]8.2e-3059.2Show/hide
Query:  NTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTA
        NTL V WTNGNIYSSS +   G                                     +D+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKK TGTA
Subjt:  NTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTA

Query:  ANKVPQQRNEPVFNNESYPQYPPPK
        AN VPQ+RNEPVFNNESYPQYPPPK
Subjt:  ANKVPQQRNEPVFNNESYPQYPPPK

XP_004152507.2 protein NOI4 [Cucumis sativus]4.5e-2873.68Show/hide
Query:  SVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        SV G+LL SD  PF  P  +         QD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKK TGTAAN VPQ+RNEPVFNNESYPQYPPPK
Subjt:  SVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

XP_008439256.1 PREDICTED: RPM1-interacting protein 4 isoform X1 [Cucumis melo]1.0e-2792.42Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TG AAN VP++RNEPVFNNESYPQYPPPK
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

XP_038894676.1 protein NOI4 isoform X1 [Benincasa hispida]5.9e-2893.94Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TGTAANKVPQQ +EPVFNNESYPQYPPPK
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

XP_038894677.1 protein NOI4 isoform X2 [Benincasa hispida]5.9e-2893.94Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        QD+GRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TGTAANKVPQQ +EPVFNNESYPQYPPPK
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

TrEMBL top hitse value%identityAlignment
A0A0A0LRE5 AvrRpt-cleavage domain-containing protein2.2e-2873.68Show/hide
Query:  SVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        SV G+LL SD  PF  P  +         QD+GR LPKFG+WDVNNPASAEGFTVIFNKARNEKK TGTAAN VPQ+RNEPVFNNESYPQYPPPK
Subjt:  SVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

A0A1S3AYE6 RPM1-interacting protein 4 isoform X21.8e-2792.31Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TG AAN VP++RNEPVFNNESYPQYPPPK
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

A0A1S3AZ04 RPM1-interacting protein 4 isoform X14.9e-2892.42Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK TG AAN VP++RNEPVFNNESYPQYPPPK
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

A0A5A7UL43 RPM1-interacting protein 4 isoform X11.8e-2757.72Show/hide
Query:  LAWNTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKIT
        +A +TL VDWT GNIYSSS +   G                                     +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK T
Subjt:  LAWNTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKIT

Query:  GTAANKVPQQRNEPVFNNESYPQ
        GTAAN VP++RNEPVFNNESYPQ
Subjt:  GTAANKVPQQRNEPVFNNESYPQ

A0A5D3BKG8 RPM1-interacting protein 4 isoform X17.0e-2756.91Show/hide
Query:  LAWNTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKIT
        +A +TL VDWT GNIYSSS +   G                                     +DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKK T
Subjt:  LAWNTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKIT

Query:  GTAANKVPQQRNEPVFNNESYPQ
        G AAN VP++RNEPVFNNESYPQ
Subjt:  GTAANKVPQQRNEPVFNNESYPQ

SwissProt top hitse value%identityAlignment
O22633 Protein NOI41.2e-1260Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        D+GRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKK TG       +     V +    P  P PK
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

Q8GYN5 RPM1-interacting protein 41.1e-0544.64Show/hide
Query:  LPKFGEWDVNNPASAEGFTVIFNKARNEK----KITGTAANKVPQQRNEPVFNNES
        +PKFG+WD NNP+SA+G+T IFNK R E+     ++G++     Q    P  NN S
Subjt:  LPKFGEWDVNNPASAEGFTVIFNKARNEK----KITGTAANKVPQQRNEPVFNNES

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein6.7e-1458.46Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        D+GRPLPKFGEWDVN+P+SAEGFTVIFNKARNEKK  G + +     ++EP +N        P K
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein6.7e-1486.84Show/hide
Query:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITG
        D+GRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKK  G
Subjt:  DRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITG

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein6.1e-1571.43Show/hide
Query:  IPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITG
        + D + P  ++D+GRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKK  G
Subjt:  IPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITG

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein6.1e-1553.95Show/hide
Query:  IPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK
        + D + P  ++D+GRPLPKFGEWDVN+PASAEGFTVIFNKAR+EKK TG       +     V +    P  P PK
Subjt:  IPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPK

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein4.4e-1353.52Show/hide
Query:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNE---KKITGTAANKV--PQQRNEPVFNNESYPQYPPPK
        +++G+PLPKFGEWDVNNPASAEGFTVIF+KA +E   KK +G   N +  PQ+      NN    Q P  K
Subjt:  QDRGRPLPKFGEWDVNNPASAEGFTVIFNKARNE---KKITGTAANKV--PQQRNEPVFNNESYPQYPPPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATACTTAGATCCCTCTTTTTTCGTGGTAGTCTGATTAGGGAGGAGTTAGCTTGGAATACTTTGGTTGTAGACTGGACCAATGGCAACATTTATAGCTCTAGTTC
AAGAAGACCATGGGGAGCTATGTTTAATGCCGCTCTACAGTCTGTCTGTGGCGTTTTATTAAAGAGTGATAAAAGCCCTTTTATCCATCCATGTGCCATACCTGACTTGA
TTCCTCCGCTTCCTTTTCAGGACAGGGGTCGTCCATTGCCAAAGTTTGGCGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCT
AGAAATGAGAAGAAGATCACTGGAACTGCTGCCAATAAGGTTCCTCAACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTACCCTCAGTATCCTCCACCGAAGGTGGT
TTTGCTGTGGTTGAAGCCTCAGTGGCTTCAAGATCTTGAATTTGTGCAACATCTTAAAGCCCGTAAAATTTTGCAGCCTTGTCCAACCGCGGGCCTCTATCTGAGTCCCA
ACAACACCAACAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAATACTTAGATCCCTCTTTTTTCGTGGTAGTCTGATTAGGGAGGAGTTAGCTTGGAATACTTTGGTTGTAGACTGGACCAATGGCAACATTTATAGCTCTAGTTC
AAGAAGACCATGGGGAGCTATGTTTAATGCCGCTCTACAGTCTGTCTGTGGCGTTTTATTAAAGAGTGATAAAAGCCCTTTTATCCATCCATGTGCCATACCTGACTTGA
TTCCTCCGCTTCCTTTTCAGGACAGGGGTCGTCCATTGCCAAAGTTTGGCGAATGGGATGTAAATAATCCTGCATCTGCAGAAGGATTTACAGTCATATTTAACAAGGCT
AGAAATGAGAAGAAGATCACTGGAACTGCTGCCAATAAGGTTCCTCAACAAAGAAATGAACCTGTCTTCAACAATGAAAGTTACCCTCAGTATCCTCCACCGAAGGTGGT
TTTGCTGTGGTTGAAGCCTCAGTGGCTTCAAGATCTTGAATTTGTGCAACATCTTAAAGCCCGTAAAATTTTGCAGCCTTGTCCAACCGCGGGCCTCTATCTGAGTCCCA
ACAACACCAACAAATGA
Protein sequenceShow/hide protein sequence
MLILRSLFFRGSLIREELAWNTLVVDWTNGNIYSSSSRRPWGAMFNAALQSVCGVLLKSDKSPFIHPCAIPDLIPPLPFQDRGRPLPKFGEWDVNNPASAEGFTVIFNKA
RNEKKITGTAANKVPQQRNEPVFNNESYPQYPPPKVVLLWLKPQWLQDLEFVQHLKARKILQPCPTAGLYLSPNNTNK