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Clc03G04110 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G04110
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionF-box/LRR-repeat protein At5g63520-like
Genome locationClcChr03:4011684..4012448
RNA-Seq ExpressionClc03G04110
SyntenyClc03G04110
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573137.1 F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3578.43Show/hide
Query:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG
        M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG
Subjt:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG

Query:  LE
        +E
Subjt:  LE

KAG7012322.1 F-box/LRR-repeat protein, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-3574.07Show/hide
Query:  MDTALGAGGV---------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHF
        M+T +GAGGV           GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF
Subjt:  MDTALGAGGV---------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHF

Query:  GIACIGLE
         IACIG+E
Subjt:  GIACIGLE

XP_022955211.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita moschata]1.2e-3578.43Show/hide
Query:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG
        M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG
Subjt:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG

Query:  LE
        +E
Subjt:  LE

XP_022994367.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita maxima]2.1e-3577.67Show/hide
Query:  MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI
        M+T +GAGGV      GG  P+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACI
Subjt:  MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI

Query:  GLE
        G+E
Subjt:  GLE

XP_023542621.1 F-box/LRR-repeat protein At5g63520-like [Cucurbita pepo subsp. pepo]4.7e-3574.77Show/hide
Query:  MDTALGAGGV--------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFG
        M+T +GAGGV          GG SP+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF 
Subjt:  MDTALGAGGV--------SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFG

Query:  IACIGLE
        I CIG+E
Subjt:  IACIGLE

TrEMBL top hitse value%identityAlignment
A0A6J1C7B9 F-box/LRR-repeat protein At5g635201.2e-3172.73Show/hide
Query:  MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE
        M+ A+GA GV+ GG  P+N DILHNI GRLPA+ FA+AA VCKTWN +CNRIL RPKF+SAVSLNPS     VAVKEVL+KVLSEPIRPHF IACIG+E
Subjt:  MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE

A0A6J1EDN6 F-box/LRR-repeat protein At5g63520-like isoform X13.9e-2779.27Show/hide
Query:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE
        MNDDILHNIF RLPA+SFAAAA V KTWNS CNRIL RPKF+SAVSLNPSLH   VAV+EV+ KVLSEPIRP F IAC+G+E
Subjt:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE

A0A6J1GT60 F-box/LRR-repeat protein At5g63520-like5.9e-3678.43Show/hide
Query:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG
        M+T +GAGGV     GG SP+NDDIL NI GRLPA+SFA+A  VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACIG
Subjt:  MDTALGAGGV---SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIG

Query:  LE
        +E
Subjt:  LE

A0A6J1JVL6 F-box/LRR-repeat protein At5g63520-like1.0e-3577.67Show/hide
Query:  MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI
        M+T +GAGGV      GG  P+NDDIL NI GRLPA+SFA+AA VCKTWNSVCNRILCRPKFSSAVSLNPSLH   VAV+EVLQKVLSEPIRPHF IACI
Subjt:  MDTALGAGGV----SDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI

Query:  GLE
        G+E
Subjt:  GLE

A0A6J1KFR0 LOW QUALITY PROTEIN: F-box/LRR-repeat protein At5g63520-like3.0e-2780.49Show/hide
Query:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE
        MNDDILHNIF RLPA+SFAAAA V KTWNS CNRIL RPKF+SAVSLNPSLH   VAV+EV+ KVLSEPIRP F IACIG+E
Subjt:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLE

SwissProt top hitse value%identityAlignment
Q9FMV0 F-box/LRR-repeat protein At5g635201.2e-1763.29Show/hide
Query:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI
        MN+D+LHNI  RLPA+SFA A+ V + W+SVCNRIL RPK  SA S NP    +L A +EVL KVLSEPIRP F IA I
Subjt:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI

Arabidopsis top hitse value%identityAlignment
AT5G63520.1 CONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).8.5e-1963.29Show/hide
Query:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI
        MN+D+LHNI  RLPA+SFA A+ V + W+SVCNRIL RPK  SA S NP    +L A +EVL KVLSEPIRP F IA I
Subjt:  MNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTC
GCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTT
CGCCTCGTGGCAGTGAAGGAGGTTCTTCAAAAGGTTCTTTCGGAGCCGATTCGGCCGCATTTTGGAATTGCCTGTATCGGTTTGGAGTTAATTTGGAAGCGGTTC
ACCATCTCTACTCACAATACATTTATAACATGTAAAATGGTGATTCTTTCTTACAAGAATAGTGAATTCTTGAAAATGAACAACATTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATACTGCCCTCGGAGCAGGTGGAGTAAGCGACGGAGGATTTTCTCCGATGAACGACGACATTCTTCACAACATCTTCGGCCGGCTTCCTGCTCAATCCTTC
GCAGCAGCGGCCTACGTTTGTAAAACTTGGAACTCTGTTTGCAATCGGATCCTCTGCCGCCCTAAATTCTCCTCCGCCGTGTCCCTGAATCCCTCTCTTCACGTT
CGCCTCGTGGCAGTGAAGGAGGTTCTTCAAAAGGTTCTTTCGGAGCCGATTCGGCCGCATTTTGGAATTGCCTGTATCGGTTTGGAGTTAATTTGGAAGCGGTTC
ACCATCTCTACTCACAATACATTTATAACATGTAAAATGGTGATTCTTTCTTACAAGAATAGTGAATTCTTGAAAATGAACAACATTGAATGA
Protein sequenceShow/hide protein sequence
MDTALGAGGVSDGGFSPMNDDILHNIFGRLPAQSFAAAAYVCKTWNSVCNRILCRPKFSSAVSLNPSLHVRLVAVKEVLQKVLSEPIRPHFGIACIGLELIWKRF
TISTHNTFITCKMVILSYKNSEFLKMNNIE