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Clc03G06105 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G06105
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationClcChr03:5780127..5780650
RNA-Seq ExpressionClc03G06105
SyntenyClc03G06105
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
KAA0041367.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.1e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]6.1e-1844Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FK P+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein3.0e-1844Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FK P+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein1.0e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
A0A5A7TI93 LINE-1 retrotransposable element ORF2 protein1.0e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.0e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.0e-1844.8Show/hide
Query:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT
        I+  F+ ASGL INL KS+ + I+VD   +  + S WG     LPI YLG+ L             E +I  K AS +YS +SKGG++TL+++ L++LPT
Subjt:  IMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLL-------------EVRIESKFASSRYSYISKGGRLTLMQAVLSNLPT

Query:  YLLSTFKAPIKVCKEIEKQMLNLLW
        Y LS FKAP+  CK IEK   N LW
Subjt:  YLLSTFKAPIKVCKEIEKQMLNLLW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAATAGGAAAATCTCATTCAGAACTTCACTACCAATAACAATAGTTTGCACATGTCACATTTATTATTCGCGGATGATATCATACTTTTTTCTATGGCTGATATT
ATATGTATTGTTAAGATCAGGAGCCTCCTTTTTCATTATGAAAGCTTTTGAACAAGCTTCTGGTCTGAAAATTAATTTGACGAAATCCTCTTTTGCTGGAATCAGTGTAG
ACCAAATGGACTCGAGCATTGTTGAATCTATGTGGGGTTGCCCTCATACTAAACTTCCCATTCCTTACCTTGGCATGTTGCTCGAAGTTAGAATCGAAAGCAAATTTGCA
TCATCGAGATATTCTTATATATCTAAGGGTGGTAGACTAACTCTAATGCAAGCGGTGTTGAGCAACTTACCTACATATCTTCTCTCTACTTTTAAGGCTCCTATCAAGGT
ATGTAAGGAGATTGAGAAACAGATGCTTAACCTCTTATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAATAGGAAAATCTCATTCAGAACTTCACTACCAATAACAATAGTTTGCACATGTCACATTTATTATTCGCGGATGATATCATACTTTTTTCTATGGCTGATATT
ATATGTATTGTTAAGATCAGGAGCCTCCTTTTTCATTATGAAAGCTTTTGAACAAGCTTCTGGTCTGAAAATTAATTTGACGAAATCCTCTTTTGCTGGAATCAGTGTAG
ACCAAATGGACTCGAGCATTGTTGAATCTATGTGGGGTTGCCCTCATACTAAACTTCCCATTCCTTACCTTGGCATGTTGCTCGAAGTTAGAATCGAAAGCAAATTTGCA
TCATCGAGATATTCTTATATATCTAAGGGTGGTAGACTAACTCTAATGCAAGCGGTGTTGAGCAACTTACCTACATATCTTCTCTCTACTTTTAAGGCTCCTATCAAGGT
ATGTAAGGAGATTGAGAAACAGATGCTTAACCTCTTATGGTAA
Protein sequenceShow/hide protein sequence
MLNRKISFRTSLPITIVCTCHIYYSRMISYFFLWLILYVLLRSGASFFIMKAFEQASGLKINLTKSSFAGISVDQMDSSIVESMWGCPHTKLPIPYLGMLLEVRIESKFA
SSRYSYISKGGRLTLMQAVLSNLPTYLLSTFKAPIKVCKEIEKQMLNLLW