; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G07060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G07060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionSm domain-containing protein
Genome locationClcChr03:7177631..7179857
RNA-Seq ExpressionClc03G07060
SyntenyClc03G07060
Gene Ontology termsGO:0031417 - NatC complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR034110 - LSM domain containing 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008444477.1 PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]4.5e-5294.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_011649337.1 uncharacterized protein LOC101206200 [Cucumis sativus]6.3e-5496.43Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_022927243.1 uncharacterized protein LOC111434149 [Cucurbita moschata]1.0e-5193.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_023520042.1 uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]2.7e-5294.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

XP_038893823.1 uncharacterized protein LOC120082644 [Benincasa hispida]1.3e-5192.86Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQES GSMVQDGSNVESNPE LDRVGKVR+LLFRRMLIGIKDGRFFLG+FYCIDKQGNIILQDAVEYRSTR +SPSPMEQRCLGLILIPNSCRVSCH+D
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDE+LALLSV
Subjt:  STIDEQLALLSV

TrEMBL top hitse value%identityAlignment
A0A0A0LSZ5 Sm domain-containing protein3.1e-5496.43Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A1S3BAH4 uncharacterized protein LOC1034877842.2e-5294.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A5D3DAS2 Small nuclear ribonucleoprotein family protein isoform 22.2e-5294.64Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1EKG3 uncharacterized protein LOC1114341494.9e-5293.75Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQESGGSMVQ G NVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNIILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

A0A6J1KMW6 uncharacterized protein LOC1114956144.1e-5191.96Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        M+QESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNIILQDAVEYRST R+SPSPMEQRCLGLILIPNSCRVSCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
        STIDEQLALLSV
Subjt:  STIDEQLALLSV

SwissProt top hitse value%identityAlignment
A2BIG9 N-alpha-acetyltransferase 38, NatC auxiliary subunit7.4e-0539.19Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDS
        K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +  +S S  E R LGL +IP    VS  V++
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDS

A4IGZ4 N-alpha-acetyltransferase 38, NatC auxiliary subunit1.3e-0434.34Show/hide
Query:  QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S        +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     + P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Q55A45 Small nuclear ribonucleoprotein-associated protein B3.0e-0632.95Show/hide
Query:  LDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL
        + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+ILI     VS  V++   E+  L
Subjt:  LDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQ-RCLGLILIPNSCRVSCHVDSTIDEQLAL

Q6GQ67 N-alpha-acetyltransferase 38-A, NatC auxiliary subunit7.4e-0535.35Show/hide
Query:  QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+IL  A E+     + P   E R LGL ++P    VS  V+
Subjt:  QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Q6NU60 N-alpha-acetyltransferase 38-B, NatC auxiliary subunit3.7e-0438.36Show/hide
Query:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        K+  LL R M I + DGR  +G F C D+  N+IL  A E+     +S    E R LGL ++P    VS  V+
Subjt:  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Arabidopsis top hitse value%identityAlignment
AT4G18372.1 Small nuclear ribonucleoprotein family protein3.4e-3766.07Show/hide
Query:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD
        MEQ +  S     S  E +    D + ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNIILQD VEYRS RR+SPSP EQRCLG+ILIP+SCR SCHVD
Subjt:  MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD

Query:  STIDEQLALLSV
         +IDEQL+L+ +
Subjt:  STIDEQLALLSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAAT
GCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTA
ACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTA
TCGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATTTATTTATAGGGATGTTTCTCCACTCTCTTCCAACGACGAGAAGCTCATAATCACAATCGGCCGCCAAGTTCGCCTCTGTTCTGCCGTCCACCACCGTCTCCTCTCCT
TTTCTACTTCCGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTG
TAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTT
CAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGT
AGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAGAAAATAAGATCAAGCCTGAGATTAAGAGGGAAGGAAAGAAAGTCTGCACACTTGTTTGAAGAGAATG
TTTATGACTGTTTATATTGCTACAAAAAAGCACTAAAACAATGATGTTTTTAGTGGAACTATGGGATTAGGAAATACGATATGTTTCCCTTATGGGTAATCAGAGTAATC
AGAGCATATTTTTACTTTCAAGTTAAAGAGTGCATACAAGTAGAACTTTTAAAAAGACTATGGAAGAAATCTGGAGGCTTGATAGAGTAACTGCTTTTTAAATTAAGATT
TTAAAATAATAATTTATGTATTTATTGATTTCATATTTTTATAGATGACTTGATTTTGAG
Protein sequenceShow/hide protein sequence
MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL
SV