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Clc03G07720 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G07720
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiondynamin-related protein 4C-like
Genome locationClcChr03:7958174..7958652
RNA-Seq ExpressionClc03G07720
SyntenyClc03G07720
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
GO:0008017 - microtubule binding (molecular function)
InterPro domainsIPR003130 - Dynamin GTPase effector
IPR020850 - GTPase effector domain
IPR022812 - Dynamin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147422.2 dynamin-related protein 4C [Cucumis sativus]8.3e-5672.96Show/hide
Query:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        MEKLTDYTCNPEY                      A KIT+ G+G+VEVG LRQYE+LLPQA+DLR+RMTAYWKIVLKRLVDCMALHLEYSI KLINEEL
Subjt:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        E EIVNE+LGP GVGIEKMLEESP+L L+RD+LNRS+GRLRE+KEVV NILDRIATF G
Subjt:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

XP_008443645.1 PREDICTED: dynamin-related protein 4C-like [Cucumis melo]2.2e-5673.58Show/hide
Query:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLPQA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EEL
Subjt:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        E+EIVNELLGP GVG+EKMLEE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Subjt:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

XP_022139859.1 LOW QUALITY PROTEIN: dynamin-related protein 4C-like [Momordica charantia]1.0e-5067.08Show/hide
Query:  MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINE
        ME LTDYTCNP+Y  K                        I++EGFG+V+VG L QY HL PQAFDLR+RMTAYWKIV+KRLVDCMALHL+YSI  LIN+
Subjt:  MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINE

Query:  ELEAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        ELE+EIV ELLGP GVGIEKMLEESP LA++R++L+RSIGRLRES+EVVANILDRIATF G
Subjt:  ELEAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

XP_024189060.1 dynamin-related protein 4C [Rosa chinensis]4.0e-4259.87Show/hide
Query:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L QAFDL++RMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+
Subjt:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT
        E+EIVNEL+GP+ G GIEKMLEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Subjt:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT

XP_024189069.2 dynamin-related protein 4C [Rosa chinensis]1.8e-4260.51Show/hide
Query:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L QAFDL+VRMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+
Subjt:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT
        E+EIVNEL+GP+ G GIEKMLEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Subjt:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT

TrEMBL top hitse value%identityAlignment
A0A0A0LX52 Uncharacterized protein4.0e-5672.96Show/hide
Query:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        MEKLTDYTCNPEY                      A KIT+ G+G+VEVG LRQYE+LLPQA+DLR+RMTAYWKIVLKRLVDCMALHLEYSI KLINEEL
Subjt:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        E EIVNE+LGP GVGIEKMLEESP+L L+RD+LNRS+GRLRE+KEVV NILDRIATF G
Subjt:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

A0A1S3B818 dynamin-related protein 4C-like1.1e-5673.58Show/hide
Query:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLPQA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EEL
Subjt:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        E+EIVNELLGP GVG+EKMLEE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Subjt:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

A0A2P6SAG1 Putative dynamin central domain, dynamin, GTPase domain, GTPase effector domain, Dynamin superfamily1.9e-4259.87Show/hide
Query:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        ME LTDYTCNPEY                        KI VEG G+VEVG LRQY  +L QAFDL++RMTAYWK+VL+RLVDCMALHL+ S+ KL+N+E+
Subjt:  MEKLTDYTCNPEYA----------------------PKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT
        E+EIVNEL+GP+ G GIEKMLEESP +A++R++L +SI +LR+SKEVVA ILD +AT
Subjt:  EAEIVNELLGPS-GVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIAT

A0A5A7UPN5 Dynamin-related protein 4C-like1.1e-5673.58Show/hide
Query:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL
        MEKLTDYTCNPEY                      APKI +EG+G+VEVGELRQYE+LLPQA+DLR+ MTAYWKIVLKRLVDCMALHLEYSI KLI+EEL
Subjt:  MEKLTDYTCNPEY----------------------APKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEEL

Query:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        E+EIVNELLGP GVG+EKMLEE+PNL+L+RD+LNRSIGRLRESK+VVAN LDRIATF G
Subjt:  EAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

A0A6J1CE52 LOW QUALITY PROTEIN: dynamin-related protein 4C-like5.1e-5167.08Show/hide
Query:  MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINE
        ME LTDYTCNP+Y  K                        I++EGFG+V+VG L QY HL PQAFDLR+RMTAYWKIV+KRLVDCMALHL+YSI  LIN+
Subjt:  MEKLTDYTCNPEYAPK------------------------ITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINE

Query:  ELEAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG
        ELE+EIV ELLGP GVGIEKMLEESP LA++R++L+RSIGRLRES+EVVANILDRIATF G
Subjt:  ELEAEIVNELLGPSGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDRIATFDG

SwissProt top hitse value%identityAlignment
Q9ZP55 Dynamin-related protein 4C3.6e-3046.5Show/hide
Query:  MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-HLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLIN
        MEKLTDYTCNPEY    T                        V GFG+V++  LR+Y  HLL  AFD+++R+T+YWKIVL+R+VD +AL+L+ S+  L+N
Subjt:  MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-HLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLIN

Query:  EELEAEIVNELLGP-SGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR
           + EIV E++ P  G G+EKMLEESP +A +R++L  SI  L+ESK+ VA I+D+
Subjt:  EELEAEIVNELLGP-SGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR

Arabidopsis top hitse value%identityAlignment
AT1G60500.1 Dynamin related protein 4C2.6e-3146.5Show/hide
Query:  MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-HLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLIN
        MEKLTDYTCNPEY    T                        V GFG+V++  LR+Y  HLL  AFD+++R+T+YWKIVL+R+VD +AL+L+ S+  L+N
Subjt:  MEKLTDYTCNPEYAPKIT------------------------VEGFGDVEVGELRQYE-HLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLIN

Query:  EELEAEIVNELLGP-SGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR
           + EIV E++ P  G G+EKMLEESP +A +R++L  SI  L+ESK+ VA I+D+
Subjt:  EELEAEIVNELLGP-SGVGIEKMLEESPNLALRRDRLNRSIGRLRESKEVVANILDR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atggagaaactcaccgattacacatgcaaccctgaatatgctccgaaaatcacggtcgaagggtttggggatgtggaggtgggagagcttcggcagtacgagcat
cttcttccacaagcgttcgatctgagagtgaggatgacagcgtactggaagatcgttctgaagagactagtggattgtatggcgcttcatcttgaatacagtatc
ggtaaattgataaacgaagaacttgaagcggagatcgtgaatgaactgttgggacctagcggcgtcggaatcgagaagatgctggaagaatctcctaaccttgct
ctgagaagggatagactcaatcggagcattgggcggctccgggagtccaaggaggtggttgccaacattcttgatcggattgcaactttcgacggatga
mRNA sequenceShow/hide mRNA sequence
atggagaaactcaccgattacacatgcaaccctgaatatgctccgaaaatcacggtcgaagggtttggggatgtggaggtgggagagcttcggcagtacgagcat
cttcttccacaagcgttcgatctgagagtgaggatgacagcgtactggaagatcgttctgaagagactagtggattgtatggcgcttcatcttgaatacagtatc
ggtaaattgataaacgaagaacttgaagcggagatcgtgaatgaactgttgggacctagcggcgtcggaatcgagaagatgctggaagaatctcctaaccttgct
ctgagaagggatagactcaatcggagcattgggcggctccgggagtccaaggaggtggttgccaacattcttgatcggattgcaactttcgacggatga
Protein sequenceShow/hide protein sequence
MEKLTDYTCNPEYAPKITVEGFGDVEVGELRQYEHLLPQAFDLRVRMTAYWKIVLKRLVDCMALHLEYSIGKLINEELEAEIVNELLGPSGVGIEKMLEESPNLA
LRRDRLNRSIGRLRESKEVVANILDRIATFDG