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Clc03G09770 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G09770
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionC2H2-type domain-containing protein
Genome locationClcChr03:12060135..12060832
RNA-Seq ExpressionClc03G09770
SyntenyClc03G09770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140330.1 uncharacterized protein LOC101220433 [Cucumis sativus]9.1e-2649.43Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV
                                                KGILTTATSGKAHD  GVSS+ G++KRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV

XP_008465804.1 PREDICTED: uncharacterized protein LOC103503399 [Cucumis melo]4.1e-2650Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV
                                                KGILTTATSGKAHD  GVSS+ G DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV

XP_022141510.1 uncharacterized protein LOC111011869 [Momordica charantia]3.4e-2851.48Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MKAETLELHQS R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKK+PRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  ---------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV
                                            KGILTTATSGKAHD AG+SS+ +DKRAMLVC+V
Subjt:  ---------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV

XP_022990074.1 uncharacterized protein LOC111487079 [Cucurbita maxima]7.0e-2649.13Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MKAETLELHQS R AV                      +K  P CKIERILKVQNT KTI KFEEYRDSIKAKA KL KK+PRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV
                                                KGILTTATSGKAHD AG+SS+G+DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV

XP_038874395.1 uncharacterized protein LOC120067077 [Benincasa hispida]3.7e-2751.15Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQS R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNG-HDKRAMLVCQV
                                                KGILTTATSGKAHD AGVSS+G +DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNG-HDKRAMLVCQV

TrEMBL top hitse value%identityAlignment
A0A0A0KN18 C2H2-type domain-containing protein4.4e-2649.43Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV
                                                KGILTTATSGKAHD  GVSS+ G++KRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV

A0A1S3CQ33 uncharacterized protein LOC1035033992.0e-2650Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV
                                                KGILTTATSGKAHD  GVSS+ G DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV

A0A5A7TWE1 C2H2-like zinc finger protein2.0e-2650Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MK ETLELHQ+ R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKKYPRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV
                                                KGILTTATSGKAHD  GVSS+ G DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSN-GHDKRAMLVCQV

A0A6J1CIA1 uncharacterized protein LOC1110118691.6e-2851.48Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MKAETLELHQS R AV                      +K  P CKIERILKVQNTPKTI KFEEYRDSIKAKATKLPKK+PRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  ---------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV
                                            KGILTTATSGKAHD AG+SS+ +DKRAMLVC+V
Subjt:  ---------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV

A0A6J1JR26 uncharacterized protein LOC1114870793.4e-2649.13Show/hide
Query:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------
        MKAETLELHQS R AV                      +K  P CKIERILKVQNT KTI KFEEYRDSIKAKA KL KK+PRC A  NELLR       
Subjt:  MKAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR-------

Query:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV
                                                KGILTTATSGKAHD AG+SS+G+DKRAMLVC+V
Subjt:  -------------------------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11490.1 zinc finger (C2H2 type) family protein1.5e-0534.25Show/hide
Query:  IERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLRGRWKGILTTATSGKAHDCAGVSSNGH
        I  I K+QN  + +  FE+YR+ +K +A KL KK+ RC A  NE L   + G   + T G ++  + +  + H
Subjt:  IERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLRGRWKGILTTATSGKAHDCAGVSSNGH

AT1G62520.1 unknown protein6.6e-0633.96Show/hide
Query:  KIERILKVQNTPKTILKFEEYRDSIKAKAT-KLPKKYPRCCAACNELLR---------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRA
        ++E I KVQN  KT+ +FEEYR+++KA++  K  ++  R  A  NE +R                     G    I T A S  A++ AG    G  ++A
Subjt:  KIERILKVQNTPKTILKFEEYRDSIKAKAT-KLPKKYPRCCAACNELLR---------------------GRWKGILTTATSGKAHDCAGVSSNGHDKRA

Query:  MLVCQV
        MLVC+V
Subjt:  MLVCQV

AT1G75710.1 C2H2-like zinc finger protein5.2e-1143.48Show/hide
Query:  KAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR
        K E+LELHQ+ R AV                      +K  P C+IERILKV NT +TI +FE+ RD++KA+A +  +K  RC A  NELLR
Subjt:  KAETLELHQSARQAV-------------------KLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR

AT4G27240.1 zinc finger (C2H2 type) family protein8.8e-1162.5Show/hide
Query:  KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR
        +I+RILKV N  KT+ +FEEYRD++K +A+KL KK+PRC A  NELLR
Subjt:  KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR

AT5G54630.1 zinc finger protein-related4.4e-1054.55Show/hide
Query:  KAKPTC-KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR
        K++  C +I+R+LKV N  KT+ +FEEYR+++K +A+KL KK+PRC A  NELLR
Subjt:  KAKPTC-KIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGCTAGACAGGCAGTCAAGCTGGCTGAAAAAGCAAAGCCAACTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACAC
TCCAAAAACCATCTTGAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCCCGTTGCTGTGCAGCATGCAACGAACTCTTAA
GGGGCCGCTGGAAAGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCACGATTGTGCTGGAGTATCATCGAATGGCCACGACAAACGAGCAATGCTGGTTTGCCAGGTA
AATAGCTGGGAGGCTGAAGAAGAGTTCAGAAGACAGCATGGAGGATTACGATTCATTGGCCGGAGCAGCAGGCATGTCTTCCAATTTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTGAAACTTTGGAGCTTCACCAGAGTGCTAGACAGGCAGTCAAGCTGGCTGAAAAAGCAAAGCCAACTTGCAAAATTGAAAGGATTCTCAAAGTCCAGAACAC
TCCAAAAACCATCTTGAAATTCGAGGAATATAGGGACTCCATTAAAGCCAAAGCCACCAAGCTTCCAAAGAAGTACCCCCGTTGCTGTGCAGCATGCAACGAACTCTTAA
GGGGCCGCTGGAAAGGCATTCTAACAACCGCTACAAGTGGAAAGGCTCACGATTGTGCTGGAGTATCATCGAATGGCCACGACAAACGAGCAATGCTGGTTTGCCAGGTA
AATAGCTGGGAGGCTGAAGAAGAGTTCAGAAGACAGCATGGAGGATTACGATTCATTGGCCGGAGCAGCAGGCATGTCTTCCAATTTGGATGA
Protein sequenceShow/hide protein sequence
MKAETLELHQSARQAVKLAEKAKPTCKIERILKVQNTPKTILKFEEYRDSIKAKATKLPKKYPRCCAACNELLRGRWKGILTTATSGKAHDCAGVSSNGHDKRAMLVCQV
NSWEAEEEFRRQHGGLRFIGRSSRHVFQFG