; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G10360 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G10360
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr03:12791194..12792401
RNA-Seq ExpressionClc03G10360
SyntenyClc03G10360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833202.1 hypothetical protein, partial [Synechococcus sp. PCC 7002]3.4e-3553.44Show/hide
Query:  EADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCP-------------------HIQNNPYD---NLGWRNHLNFGWGGNQQQPQR
        E D  +NL+AQ+ANM S+LQT+ L NQG  VA+M+A++ +N+TASV C                    ++QNNPY    N GWRNHLNFGWG NQQQ Q 
Subjt:  EADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCP-------------------HIQNNPYD---NLGWRNHLNFGWGGNQQQPQR

Query:  AEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTIQIAEELENEKQEA
        AEQQPQRGNP GFNQ NQ QYHQ+ RD QAD S S  SLESLLR    +  +TR   +A  QSQ  A  NLE+  IQ+   LENE+Q A
Subjt:  AEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTIQIAEELENEKQEA

XP_038874978.1 putative uncharacterized protein DDB_G0279653 [Benincasa hispida]6.0e-1638.89Show/hide
Query:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGR------------PVAAMNAVHAMNSTASVDCP
        TY+ A  +  R   +T++WVDD Y  R   RR+    +  AD    LAAQ+A + S+LQT+ + NQG              +AA+N V      A+  CP
Subjt:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGR------------PVAAMNAVHAMNSTASVDCP

Query:  H-------IQNNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQ----PQRGNPSGFNQWNQDQYHQYSRDQQ---ADESASLSSLESLLRKENSKIEA
                IQNNPY N    GWRNH NF WGGN  Q  ++  Q      RGNPS F+Q NQ+Q HQ     Q   ++ S +LSS ESLL+    K +A
Subjt:  H-------IQNNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQ----PQRGNPSGFNQWNQDQYHQYSRDQQ---ADESASLSSLESLLRKENSKIEA

XP_038876668.1 uncharacterized protein LOC120069060 [Benincasa hispida]6.0e-1634.82Show/hide
Query:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGR-----------PVAAMNAVHAMNSTASVDCP-
        TY+ A  +  R   +T +WVDD Y  R   RR+       AD    LA Q+  + S+LQ + +   G             VAA++ V      A   CP 
Subjt:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGR-----------PVAAMNAVHAMNSTASVDCP-

Query:  ------HIQNNPYD---NLGWRNHLNFGWGGNQQQ----PQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYE
               IQ N Y    NLGW NH NFGWG NQ Q      +      RGNP  F+Q NQ+Q    ++   ++ S   SSLESLL++   K +   QL  
Subjt:  ------HIQNNPYD---NLGWRNHLNFGWGGNQQQ----PQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYE

Query:  ATLQSQATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQC
             Q ++IRNLEIQ  Q A EL N   + L S +E    + +EQC
Subjt:  ATLQSQATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQC

XP_038889363.1 uncharacterized protein LOC120079279 [Benincasa hispida]1.0e-1536.24Show/hide
Query:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCPHIQNNPYDNLGW
        TY+ A  +  R   +T++ VDD Y  R + RR+    +   D    LAAQ+A + S+LQT+ L NQG         +A    A++ C           G 
Subjt:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCPHIQNNPYDNLGW

Query:  RNHLNFGWGGNQQQPQRAEQQ----PQRGNPSGFNQWNQDQYHQ---YSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTI
         NH NFGWGGN  Q   +  Q      RGN   F+Q NQ+Q HQ    +    ++ SA+ SSLESLL++   K        +  +QSQ ++IRNLEIQ  
Subjt:  RNHLNFGWGGNQQQPQRAEQQ----PQRGNPSGFNQWNQDQYHQ---YSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTI

Query:  QIAEELENEKQEALLSTTEVPRGNSEEQC
        Q+A EL N     L S +E P  + +EQC
Subjt:  QIAEELENEKQEALLSTTEVPRGNSEEQC

XP_038902511.1 uncharacterized protein LOC120089170 [Benincasa hispida]4.0e-2034Show/hide
Query:  YSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLR-----------NQGRPVAAMNAVHAMNSTASVDCP--
        Y+ A  +  R   +T++WVD+ Y  R   RR+ ++ +   D+   LAAQ+A + S+LQ + +            N    VA ++        +   CP  
Subjt:  YSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLR-----------NQGRPVAAMNAVHAMNSTASVDCP--

Query:  -----HIQNNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQ---PQRGNPSGFNQWNQDQYHQ----YSRDQQADESASLSSLESLLRKENSKIEATRQL
              IQNNPY+N    GWRNH NF WGGN  Q  +   Q     RGNP  F+Q     +HQ    +++   ++ S + SSLE+LL++   K       
Subjt:  -----HIQNNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQ---PQRGNPSGFNQWNQDQYHQ----YSRDQQADESASLSSLESLLRKENSKIEATRQL

Query:  YEATLQSQATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQ
         +A +QSQA++IRNLE+Q  Q+A EL N     + S +E P  N +EQCQ
Subjt:  YEATLQSQATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQ

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129453.6e-0630.33Show/hide
Query:  EWVDDEYEFRPTNRRQTQ--AGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASV-----------DCPH-------------IQ
        E   + Y++ P+ R  ++   G +E D    L  Q+A +   L TL              VHA+ ++  V            CP+              Q
Subjt:  EWVDDEYEFRPTNRRQTQ--AGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASV-----------DCPH-------------IQ

Query:  NNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNL
        NNPY N    GWRNH NF W  N          P+   P GF Q  + Q  +             S LE LL +  SK        +A +QSQ  ++RNL
Subjt:  NNPYDNL---GWRNHLNFGWGGNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNL

Query:  EIQTIQIAEELENEKQEALLSTTEV-PRGNSEEQCQGETLLSGK
        E Q  Q+A  + N  Q +L S T++ P+G  +EQCQ  TL SGK
Subjt:  EIQTIQIAEELENEKQEALLSTTEV-PRGNSEEQCQGETLLSGK

A0A6J1BDW4 uncharacterized protein LOC1104265842.5e-0732.29Show/hide
Query:  GMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASV-----------DCPH-------------IQNNPYDNL---GWRNHLNFGWG
        G +E D    L  Q+A +   L TL              VHA+ ++  V            CP+              QNNPY N    GWRNH NF W 
Subjt:  GMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASV-----------DCPH-------------IQNNPYDNL---GWRNHLNFGWG

Query:  GNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTIQIAEELENEKQEALLS
         N          P+   P GF        HQ +R Q +++    S LE LL +  SK        +A +QSQ  ++RNLE Q  Q+A  + N  Q +L S
Subjt:  GNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTIQIAEELENEKQEALLS

Query:  TTEV-PRGNSEEQCQGETLLSGK
         T++ P+G  +EQCQ  TL SGK
Subjt:  TTEV-PRGNSEEQCQGETLLSGK

A0A6J1DAE9 uncharacterized protein LOC1110185144.5e-0928.4Show/hide
Query:  RPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQ-----------GRPVAAMNAV---HAMNSTASVDCPHIQN-------------NPYDNL-
        +P  ++Q QAG+   D+A ++  ++  M  ML+ L L  +             PV  +N +   +  ++    +CPH                NPY N  
Subjt:  RPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQ-----------GRPVAAMNAV---HAMNSTASVDCPHIQN-------------NPYDNL-

Query:  --GWRNHLNFGWGGNQQQPQRAEQQPQRGN----PSGFNQWNQ-----DQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRN
          G R+H NF WGG        + Q Q+      PS F+   Q      QY+Q  R        + +SLE++ ++  ++ +A  Q   AT+Q+QA  +RN
Subjt:  --GWRNHLNFGWGGNQQQPQRAEQQPQRGN----PSGFNQWNQ-----DQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRN

Query:  LEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQGETLLSG
        LE+Q  Q A +L+   Q +    TEV + +  EQC+  TL SG
Subjt:  LEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQGETLLSG

A0A6J1EQ90 uncharacterized protein LOC1114364111.9e-0728.46Show/hide
Query:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCPH-----------
        TY+ A  +  R   +  +W D     R    R+T+ G+ E D  +++ AQLA++ ++LQ L L       A ++   A+N TA+  C +           
Subjt:  TYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCPH-----------

Query:  -----------------IQNNPYDNL---GWRNHLNFGWGG----NQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQAD-----ESASLSSLESLL
                         ++NNP+ N    GWRNH NF W G    NQQ P      P+   PSGF   NQ  Y     + Q       +  S +S+ESL+
Subjt:  -----------------IQNNPYDNL---GWRNHLNFGWGG----NQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQAD-----ESASLSSLESLL

Query:  RKENSKIEATRQLYEATLQSQATAIRNLEIQT--IQIAEELENEKQEALLSTTEVPRGNSEEQCQGE
        ++  +K        +A +QSQ  ++RNLE+Q    + AE+ ++  QE    T +  + N E   Q E
Subjt:  RKENSKIEATRQLYEATLQSQATAIRNLEIQT--IQIAEELENEKQEALLSTTEVPRGNSEEQCQGE

A0A6P6XBM5 uncharacterized protein LOC1137409691.7e-0831.47Show/hide
Query:  SHAGNLFLRTPWDTNEWVDD--EYEFRPTNRR---QTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNST-ASVDCPHI------
        S  G L  +TP + +  +++     ++  N R   +  AGM E D  N L+ Q+ N++ +L      +    VA  +     + T   VD   +      
Subjt:  SHAGNLFLRTPWDTNEWVDD--EYEFRPTNRR---QTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNST-ASVDCPHI------

Query:  ----QNNPYDNL---GWRNHLNFGW--GGNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLS-SLESLLRKENSKIEATRQLYEATLQS
            QNNPY N    GWRNH NFGW   GNQQ+P          NP GF            R  QA+   S   ++E L +  + + E      E  L  
Subjt:  ----QNNPYDNL---GWRNHLNFGW--GGNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLS-SLESLLRKENSKIEATRQLYEATLQS

Query:  QATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQGETLLSGK
          T  RN+E+Q  QIA  L N  Q  L S TEV   N +EQ Q  TL SG+
Subjt:  QATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSEEQCQGETLLSGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTACTCACATGCCGGAAATCTTTTTCTCAGAACTCCATGGGACACTAATGAGTGGGTGGACGACGAATATGAATTTCGTCCCACCAATAGAAGGCAAACGCAAGC
TGGAATGTTTGAAGCTGATGTTGCCAACAATCTTGCAGCGCAGCTCGCCAATATGATATCCATGCTGCAAACACTAGTCTTGAGAAATCAAGGTAGACCAGTTGCTGCGA
TGAACGCAGTGCACGCAATGAACTCGACAGCATCTGTAGACTGCCCGCATATTCAAAACAACCCCTACGACAATTTGGGTTGGAGGAACCACCTTAACTTCGGATGGGGT
GGGAATCAACAACAACCGCAGAGGGCTGAGCAGCAGCCGCAGAGAGGCAACCCTTCTGGTTTCAACCAATGGAATCAAGACCAGTATCATCAGTATTCGAGGGATCAGCA
GGCGGACGAATCAGCCTCATTGTCTTCCCTGGAATCTCTTTTACGAAAAGAAAACAGTAAAATTGAAGCAACGCGCCAGTTGTACGAAGCGACGCTCCAAAGCCAAGCCA
CTGCAATTCGCAATTTAGAAATTCAAACGATTCAAATTGCAGAGGAGCTCGAAAATGAAAAGCAAGAAGCATTGCTAAGTACAACCGAAGTTCCAAGAGGGAACTCGGAA
GAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCATAGCGCATAACGAGGGGACGCAAGGAAACTTGCAACTCCTAAACGTTCCAACAAGTCAACCGAT
GGAGACTACCACGCATAATGTCCAGCATCTGTCATCCTCCACCGCATCAGAAGAGGAAAATAGAGAGCGGAGAGAAAAAGCAACGCAGGTAGAACCTGTGTCTGTATATG
AAGATACTACTTCTAGACGCGTCCTGGTTTACGTCCAAGAAGAAATCTCAACGCCCCGCGTGGGTGATCAGGTAAAATTTAATGTGATTAACGCATTAAACGATACTGAT
CATTTTCAATTTTGTCTAACGAACGCATATATCAATGAAAAGACAAAAACTATGAACGCGGTGTTGAGAAATGAAATCCTCAAGGTTGGTGAAGATGGTGAAGATGATGA
AATTAATTTATTCTCCGATGACAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTACTCACATGCCGGAAATCTTTTTCTCAGAACTCCATGGGACACTAATGAGTGGGTGGACGACGAATATGAATTTCGTCCCACCAATAGAAGGCAAACGCAAGC
TGGAATGTTTGAAGCTGATGTTGCCAACAATCTTGCAGCGCAGCTCGCCAATATGATATCCATGCTGCAAACACTAGTCTTGAGAAATCAAGGTAGACCAGTTGCTGCGA
TGAACGCAGTGCACGCAATGAACTCGACAGCATCTGTAGACTGCCCGCATATTCAAAACAACCCCTACGACAATTTGGGTTGGAGGAACCACCTTAACTTCGGATGGGGT
GGGAATCAACAACAACCGCAGAGGGCTGAGCAGCAGCCGCAGAGAGGCAACCCTTCTGGTTTCAACCAATGGAATCAAGACCAGTATCATCAGTATTCGAGGGATCAGCA
GGCGGACGAATCAGCCTCATTGTCTTCCCTGGAATCTCTTTTACGAAAAGAAAACAGTAAAATTGAAGCAACGCGCCAGTTGTACGAAGCGACGCTCCAAAGCCAAGCCA
CTGCAATTCGCAATTTAGAAATTCAAACGATTCAAATTGCAGAGGAGCTCGAAAATGAAAAGCAAGAAGCATTGCTAAGTACAACCGAAGTTCCAAGAGGGAACTCGGAA
GAACAATGTCAAGGTGAGACATTGTTAAGTGGGAAAATCAATCCCATAGCGCATAACGAGGGGACGCAAGGAAACTTGCAACTCCTAAACGTTCCAACAAGTCAACCGAT
GGAGACTACCACGCATAATGTCCAGCATCTGTCATCCTCCACCGCATCAGAAGAGGAAAATAGAGAGCGGAGAGAAAAAGCAACGCAGGTAGAACCTGTGTCTGTATATG
AAGATACTACTTCTAGACGCGTCCTGGTTTACGTCCAAGAAGAAATCTCAACGCCCCGCGTGGGTGATCAGGTAAAATTTAATGTGATTAACGCATTAAACGATACTGAT
CATTTTCAATTTTGTCTAACGAACGCATATATCAATGAAAAGACAAAAACTATGAACGCGGTGTTGAGAAATGAAATCCTCAAGGTTGGTGAAGATGGTGAAGATGATGA
AATTAATTTATTCTCCGATGACAATTAG
Protein sequenceShow/hide protein sequence
MTYSHAGNLFLRTPWDTNEWVDDEYEFRPTNRRQTQAGMFEADVANNLAAQLANMISMLQTLVLRNQGRPVAAMNAVHAMNSTASVDCPHIQNNPYDNLGWRNHLNFGWG
GNQQQPQRAEQQPQRGNPSGFNQWNQDQYHQYSRDQQADESASLSSLESLLRKENSKIEATRQLYEATLQSQATAIRNLEIQTIQIAEELENEKQEALLSTTEVPRGNSE
EQCQGETLLSGKINPIAHNEGTQGNLQLLNVPTSQPMETTTHNVQHLSSSTASEEENRERREKATQVEPVSVYEDTTSRRVLVYVQEEISTPRVGDQVKFNVINALNDTD
HFQFCLTNAYINEKTKTMNAVLRNEILKVGEDGEDDEINLFSDDN