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Clc03G10570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G10570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTranslocase subunit seca
Genome locationClcChr03:12901786..12903152
RNA-Seq ExpressionClc03G10570
SyntenyClc03G10570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047427.1 uncharacterized protein E6C27_scaffold498G00180 [Cucumis melo var. makuwa]8.0e-7188.74Show/hide
Query:  MSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSP
        M +AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDA+DLLF KGGCGLE FN S TQLASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLFS 
Subjt:  MSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSP

Query:  AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        AASPP SPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_004140334.1 uncharacterized protein LOC101221533 [Cucumis sativus]4.9e-7689.31Show/hide
Query:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
        MNW+CEEM + AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDALDLLF KGGCGLENFN S  QLASSPPYFCGSPPSRVANPLIQDARFGDEKP
Subjt:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP

Query:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        KLLPLFSPAASPP SPPPSAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_008465783.1 PREDICTED: uncharacterized protein LOC103503385 [Cucumis melo]9.2e-7588.68Show/hide
Query:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
        MNW+CEEM S AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDA+DLLF KGGCGLE FN S TQLASS PYFCGSPPSRVANPLIQDARFGDEKP
Subjt:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP

Query:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        KLLPLFS AASPP SPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_022971782.1 uncharacterized protein LOC111470460 [Cucurbita maxima]8.1e-6379.87Show/hide
Query:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENF-NRSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK
        EEMM AA  DR ER+VCPKPRRLGL+N T NDNPFRH FDS    DALDLLFFKGGC LENF + STQLASSPPY CG+PPSRVANPLIQDARFG+EKPK
Subjt:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENF-NRSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK

Query:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        +LP+FSP  A PP SPPPS  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

XP_038906747.1 uncharacterized protein LOC120092671 [Benincasa hispida]1.2e-7991.82Show/hide
Query:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFN-RSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
        MNW+CEEMM+  AADR ER+VCPKPRRLGLMN+ GNDNPFRH FDSDALDLLFFKGGCGLENFN  STQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
Subjt:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFN-RSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKP

Query:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        KLLPLFSPAASPPSSPPPSAGRKGGCVR+NFGNNPAVRIEGFDCRLDRERRNRS+PALA
Subjt:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

TrEMBL top hitse value%identityAlignment
A0A0A0KRF1 Uncharacterized protein2.4e-7689.31Show/hide
Query:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
        MNW+CEEM + AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDALDLLF KGGCGLENFN S  QLASSPPYFCGSPPSRVANPLIQDARFGDEKP
Subjt:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP

Query:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        KLLPLFSPAASPP SPPPSAGRKGGCVRVNFG NPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A1S3CR46 uncharacterized protein LOC1035033854.4e-7588.68Show/hide
Query:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP
        MNW+CEEM S AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDA+DLLF KGGCGLE FN S TQLASS PYFCGSPPSRVANPLIQDARFGDEKP
Subjt:  MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKP

Query:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        KLLPLFS AASPP SPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  KLLPLFSPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A5D3C147 Uncharacterized protein3.9e-7188.74Show/hide
Query:  MSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSP
        M +AA DR ER+VCPKPRRLGL+N+T NDNPFRH FDSDA+DLLF KGGCGLE FN S TQLASS PYFCGSPPSRVANPLIQDARFGDEKPKLLPLFS 
Subjt:  MSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRS-TQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSP

Query:  AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        AASPP SPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
Subjt:  AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A6J1E6Z2 uncharacterized protein LOC1114311746.7e-6379.87Show/hide
Query:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENFN-RSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK
        EEM  AA  DR ER+VCPKPRRLGL+N T NDNPFRH FDS    DALDLLFFKGGC LENFN  STQLASSPPY CG+PPSRVANPLIQDARFG+EKPK
Subjt:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENFN-RSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK

Query:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        +LP+FSP  A PP SPPPS  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

A0A6J1I2X1 uncharacterized protein LOC1114704603.9e-6379.87Show/hide
Query:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENF-NRSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK
        EEMM AA  DR ER+VCPKPRRLGL+N T NDNPFRH FDS    DALDLLFFKGGC LENF + STQLASSPPY CG+PPSRVANPLIQDARFG+EKPK
Subjt:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDS----DALDLLFFKGGCGLENF-NRSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPK

Query:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        +LP+FSP  A PP SPPPS  R GG VR NFGN PAVRIEGFDCRLDRERRNRSIPALA
Subjt:  LLPLFSP-AASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13390.1 unknown protein6.4e-2642.01Show/hide
Query:  EEM-MSAAAADRHERVVCPKPRRLGLMNNTGNDN---PFRHSFD-------SDALDLLFFKGGCGLENFNRSTQLASSPPYFCGSPPSRVANPLIQDARF
        EEM  +AA +DR + V+CPKPRR+G +N+  + +      H  +       S+ LD +  KGG G    +++  + + P +F GSPPSRV+NPL +D+ F
Subjt:  EEM-MSAAAADRHERVVCPKPRRLGLMNNTGNDN---PFRHSFD-------SDALDLLFFKGGCGLENFNRSTQLASSPPYFCGSPPSRVANPLIQDARF

Query:  GDEKPKLLPLFSPAASPPSS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         +E   LL + SP+ S P +    PPS+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Subjt:  GDEKPKLLPLFSPAASPPSS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT1G13390.2 unknown protein6.4e-2642.01Show/hide
Query:  EEM-MSAAAADRHERVVCPKPRRLGLMNNTGNDN---PFRHSFD-------SDALDLLFFKGGCGLENFNRSTQLASSPPYFCGSPPSRVANPLIQDARF
        EEM  +AA +DR + V+CPKPRR+G +N+  + +      H  +       S+ LD +  KGG G    +++  + + P +F GSPPSRV+NPL +D+ F
Subjt:  EEM-MSAAAADRHERVVCPKPRRLGLMNNTGNDN---PFRHSFD-------SDALDLLFFKGGCGLENFNRSTQLASSPPYFCGSPPSRVANPLIQDARF

Query:  GDEKPKLLPLFSPAASPPSS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
         +E   LL + SP+ S P +    PPS+ R G CV    +FGNNP VR+ GFDC  DR   NRSI  LA
Subjt:  GDEKPKLLPLFSPAASPPSS---PPPSAGRKGGCV--RVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT1G68490.1 unknown protein1.2e-3252.9Show/hide
Query:  VVCPKPRRLGLMNNTGNDNP-----FRHSF-------DSDALDLLFFKGGCGLENFNRSTQLASSP-PYFCGSPPSRVANPLIQDARFGDEKPKLLPLFS
        VVCPKPRR+GL NN  + +      F H         ++D LD++  K G G E  N+  Q+  SP P+ CGSPPSRVANPL QDARF DE   +  +  
Subjt:  VVCPKPRRLGLMNNTGNDNP-----FRHSF-------DSDALDLLFFKGGCGLENFNRSTQLASSP-PYFCGSPPSRVANPLIQDARFGDEKPKLLPLFS

Query:  P--AASPPSSPPPSAGRKGGC-VRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA
        P     P SSP  S+GRKGGC VR NFGN+P VR+EGFDC LDR+ RN SIPALA
Subjt:  P--AASPPSSPPPSAGRKGGC-VRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA

AT3G02555.1 unknown protein9.3e-2554.11Show/hide
Query:  ERVVCPKPRRLGLMNNTGNDNPFRHSFD-SDALDLLFFKGGCG-LENFNRSTQLAS-SPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPSS
        + VVCPKPRR    NN     PFR  F  S A D+   K G   L+ F R   ++S SPP+F GSPPSR ANPL QDARFGDEK   L   SP+ SP   
Subjt:  ERVVCPKPRRLGLMNNTGNDNPFRHSFD-SDALDLLFFKGGCG-LENFNRSTQLAS-SPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLFSPAASPPSS

Query:  PPPSAGR-KGGCVRVNFGNNPA-VRIEGFDCRLDRERRNRSIPALA
          PSA R K GC R+ FG  PA VR+EGFDC L+R+R N SIPA+A
Subjt:  PPPSAGR-KGGCVRVNFGNNPA-VRIEGFDCRLDRERRNRSIPALA

AT5G16110.1 unknown protein6.2e-2948.82Show/hide
Query:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGL--------ENFNRSTQLASSPPYFCGSPPSRVANPLIQDARFGDE
        EEMM     DR + VVCPKPRR+GL+ N     P R      A DL   K G  L        +N      L+SSPPYF GSPPSR ANPL QDARF DE
Subjt:  EEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGL--------ENFNRSTQLASSPPYFCGSPPSRVANPLIQDARFGDE

Query:  K--------PKLLPLFSPAASPPSSPPPSAGRKGGCVRVNFG-NNPAVRIEGFDCRLDRERRNRSIPALA
        K        P L P +S    P  S   S+    GCVR+ FG N+PAVR+EGFDC L+R+R+N SIPA+A
Subjt:  K--------PKLLPLFSPAASPPSSPPPSAGRKGGCVRVNFG-NNPAVRIEGFDCRLDRERRNRSIPALA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGGCTTTGTGAAGAGATGATGAGCGCCGCCGCGGCCGACCGCCATGAGCGAGTGGTTTGCCCAAAACCCCGCCGTCTCGGTCTTATGAATAATACCGGC
AACGACAACCCATTTAGACACTCTTTTGATTCAGATGCTCTCGATCTCCTCTTCTTTAAGGGTGGTTGTGGATTGGAGAATTTTAACCGTAGTACACAATTAGCC
TCGTCGCCTCCGTATTTTTGTGGGTCGCCGCCGAGCAGAGTAGCTAACCCGTTAATCCAAGACGCTAGATTTGGGGATGAGAAGCCAAAGCTGCTCCCCCTCTTC
TCGCCGGCGGCTTCTCCTCCGTCGTCTCCACCGCCCTCGGCCGGTCGGAAAGGCGGATGTGTGCGGGTAAATTTTGGTAACAACCCGGCGGTGAGGATCGAGGGG
TTTGATTGCCGCCTCGACAGGGAGAGGCGAAACCGCAGCATACCTGCTCTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
AAGGAAGGCAACAAAATCTTTCTTATCTGTGTAAAATAATTTCCTTGTAAAACAAAAAAGGATGAATATTGAATAGAGAGGAAATCTCTCCATCTCTCTCTCTCT
ATATCTCTCTAGCTGTGCTTTGCTGTTGCCCAATAGATATTACCCTTTTTTCCCCCTTCTCTCTCCCTTCCCTCTTCATTTTATTTTCCCATTAACAAATCCGAT
TCCCCTGTCTCTTTGTCCCTTCTCTTATGTTCTCTTGTTATAACTTATAATTCACGCTCCTCCCCTCTCCTTTTTTCTCCCAACCACAATCCTCTCTCTTCTTCT
TCAGCCAAACAGAAAACTAAAATTAGAAGAAGATGAATTGGCTTTGTGAAGAGATGATGAGCGCCGCCGCGGCCGACCGCCATGAGCGAGTGGTTTGCCCAAAAC
CCCGCCGTCTCGGTCTTATGAATAATACCGGCAACGACAACCCATTTAGACACTCTTTTGATTCAGATGCTCTCGATCTCCTCTTCTTTAAGGGTGGTTGTGGAT
TGGAGAATTTTAACCGTAGTACACAATTAGCCTCGTCGCCTCCGTATTTTTGTGGGTCGCCGCCGAGCAGAGTAGCTAACCCGTTAATCCAAGACGCTAGATTTG
GGGATGAGAAGCCAAAGCTGCTCCCCCTCTTCTCGCCGGCGGCTTCTCCTCCGTCGTCTCCACCGCCCTCGGCCGGTCGGAAAGGCGGATGTGTGCGGGTAAATT
TTGGTAACAACCCGGCGGTGAGGATCGAGGGGTTTGATTGCCGCCTCGACAGGGAGAGGCGAAACCGCAGCATACCTGCTCTGGCTTAGAAACCCGATCCAAGCC
GAGCTGAGCCGAGCTGATTGAGCAATGATGATGAAGAAGAAAACAAACACATGGATTTTTATTTTTTTTCCCTACAATTTTAAATTAAATATTTAAAGTAAAATT
TTGAAAAAAAAAAAAGAACTTTTTTGACCAAACACCATTATTGTAAATAATGTGAAAAAGAAATCCAAGTAAATATTATGTT
Protein sequenceShow/hide protein sequence
MNWLCEEMMSAAAADRHERVVCPKPRRLGLMNNTGNDNPFRHSFDSDALDLLFFKGGCGLENFNRSTQLASSPPYFCGSPPSRVANPLIQDARFGDEKPKLLPLF
SPAASPPSSPPPSAGRKGGCVRVNFGNNPAVRIEGFDCRLDRERRNRSIPALA