CuGenDBv2

Gene ID	Clc03G12380
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Transposon Tf2-1 polyprotein
Genome location	ClcChr03:19213886..19214116
RNA-Seq Expression	Clc03G12380
Synteny	Clc03G12380
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0098869 - cellular oxidant detoxification (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0004601 - peroxidase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

CAA7053500.1 unnamed protein product [Microthlaspi erraticum]

2.8e-21

65.79

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDF+  LP+S+G+N+ILVVVD LSKYAHFL LK+P+TA  VA + ++E+VRLHG PR++VSDRD +FTS FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

KAD5802917.1 hypothetical protein E3N88_14277 [Mikania micrantha]

2.8e-21

68.42

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI  LP S G+N ILVVVD LSKYAHFL LK+PYTA  VA L +KEI+RLHG+P+S+VSDRD +F S FW+E+F
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

KZV21584.1 peroxidase 64 [Dorcoceras hygrometricum]

2.8e-21

68.42

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI  LPKS G++ ILVVVD LSKY HF+ LK+PYTA +VA   +KE+VRLHGVPRS+VSDRD+IF S+FW+E+F
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

PNX81711.1 transposon Tf2-1 polyprotein [Trifolium pratense]

1.6e-21

67.11

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP S++SDRD +F S+FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

PNY03372.1 hypothetical protein L195_g026699 [Trifolium pratense]

9.7e-22

67.11

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP+S++SDRD +F S+FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

TrEMBL top hits

e value

%identity

Alignment

A0A2K3LT48 Transposon Tf2-1 polyprotein

8.0e-22

67.11

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP S++SDRD +F S+FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

A0A2K3NJZ4 Integrase catalytic domain-containing protein

4.7e-22

67.11

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI +LPKSNGY +ILVVVD LSKY+HF+ LK+P+TA  +A++ +KEIVRLHGVP+S++SDRD +F S+FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

A0A2Z7AIK0 Peroxidase 64

1.4e-21

68.42

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI  LPKS G++ ILVVVD LSKY HF+ LK+PYTA +VA   +KE+VRLHGVPRS+VSDRD+IF S+FW+E+F
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

A0A5N6P2B1 Uncharacterized protein

1.4e-21

68.42

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDFI  LP S G+N ILVVVD LSKYAHFL LK+PYTA  VA L +KEI+RLHG+P+S+VSDRD +F S FW+E+F
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

A0A6D2K9A3 Uncharacterized protein

1.4e-21

65.79

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF
        MDF+  LP+S+G+N+ILVVVD LSKYAHFL LK+P+TA  VA + ++E+VRLHG PR++VSDRD +FTS FW+ELF
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

9.8e-09

39.19

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE
        MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ +++D D+IFTS  W++
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE

P0CT35 Transposon Tf2-2 polyprotein

9.8e-09

39.19

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE
        MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ +++D D+IFTS  W++
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE

P0CT36 Transposon Tf2-3 polyprotein

9.8e-09

39.19

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE
        MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ +++D D+IFTS  W++
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE

P0CT41 Transposon Tf2-12 polyprotein

9.8e-09

39.19

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE
        MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ +++D D+IFTS  W++
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE

Q9UR07 Transposon Tf2-11 polyprotein

9.8e-09

39.19

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Query:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE
        MDFI  LP+S+GYN++ VVVD  SK A  +      TA   A +  + ++   G P+ +++D D+IFTS  W++
Subjt:  MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEE

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATCTACGATCTGCCGAAGTCCAATGGGTACAATTCCATCCTTGTTGTGGTCGATTGGCTTTCCAAATACGCTCACTTTCTTGCATTAAAATACCCCTACAC
TGCTGTATTAGTAGCTGCCCTGATTTTAAAAGAAATTGTTCGCTTACACGGGGTGCCTCGAAGTGTTGTATCTGATCGAGACAATATCTTCACCAGTTTATTTTGGGAAG
AGCTCTTTTAG

mRNA sequence

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Protein sequence

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MDFIYDLPKSNGYNSILVVVDWLSKYAHFLALKYPYTAVLVAALILKEIVRLHGVPRSVVSDRDNIFTSLFWEELF

Clc03G12380 (gene) of Watermelon (cordophanus) v2 genome