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Clc03G14310 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G14310
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 reverse transcriptase-like
Genome locationClcChr03:25615178..25615573
RNA-Seq ExpressionClc03G14310
SyntenyClc03G14310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN75409.1 hypothetical protein VITISV_018961 [Vitis vinifera]9.5e-0939.39Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL
        E+GGL L  +    K+L  KW WRF  EK  LW+ ++ AKYG   FG +     E+     W  I+K  D  + N+   VGNGT   FC  L CG   L
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL

KAG2665314.1 hypothetical protein I3760_15G002700 [Carya illinoinensis]5.6e-0941.18Show/hide
Query:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLA
        QP++ GGL + D+K   K+L  KW WR+ LE  ALW+N+I  KYGS   G        +   S W  I K  D   SN + +VGNG    F   L CG A
Subjt:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLA

Query:  PL
         L
Subjt:  PL

KAG7984487.1 hypothetical protein I3843_04G163600 [Carya illinoinensis]5.6e-0940.66Show/hide
Query:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF
        QP++ GGL + D+K   K+L  KW WR+ LE  ALW+N+I  KYGS   G        +   S W  I K  D   SN + +VGNG    F
Subjt:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF

PON86224.1 hypothetical protein TorRG33x02_179430, partial [Trema orientale]2.1e-0842.17Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNG
        ++GGL +  +  R K+L  KW  RF  EK ALW  +IK+KYG         I   +T RSPW  I+K  DI Y  +  +VGNG
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNG

TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]2.8e-0837.5Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF
        EEGGL +  ++   K+L +KW WR+  E  ALWR LI+ KY   H G  P+ +  S++++PW  I+ + D   SN   ++ NG   +F
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF

TrEMBL top hitse value%identityAlignment
A0A2P5EL14 Uncharacterized protein (Fragment)1.0e-0842.17Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNG
        ++GGL +  +  R K+L  KW  RF  EK ALW  +IK+KYG         I   +T RSPW  I+K  DI Y  +  +VGNG
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNG

A0A5A7UV84 Reverse transcriptase domain-containing protein1.3e-0837.5Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF
        EEGGL +  ++   K+L +KW WR+  E  ALWR LI+ KY   H G  P+ +  S++++PW  I+ + D   SN   ++ NG   +F
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF

A0A7C9A7N5 zf-RVT domain-containing protein (Fragment)1.6e-0939.56Show/hide
Query:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF
        QP   GGL + D++   ++L  KW WRF  EKG LWR ++  KYG+ +FG  P+    S   S W +I+K  +  Y +   EVG GT  +F
Subjt:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF

A0A7C9ABD9 zf-RVT domain-containing protein (Fragment)1.6e-0939.56Show/hide
Query:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF
        QP   GGL + D++   ++L  KW WRF  EKG LWR ++  KYG+ +FG  P+    S   S W +I+K  +  Y +   EVG GT  +F
Subjt:  QPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAF

A5C8J0 Uncharacterized protein4.6e-0939.39Show/hide
Query:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL
        E+GGL L  +    K+L  KW WRF  EK  LW+ ++ AKYG   FG +     E+     W  I+K  D  + N+   VGNGT   FC  L CG   L
Subjt:  EEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFC--LRCGLAPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACATTCACAACCAGTGGAAGAGGGTGGTCTCGACTTATTTGACATAAAGCATCGTATCAAATCTCTCTTTGCGAAGTGGTTTTGGCGCTTTCAACTAGAAAAGGG
AGCCTTATGGAGAAATCTCATCAAGGCAAAGTATGGTTCCCACCATTTTGGCCGTAAGCCTACCATCCATTGGGAATCCACAAATAGAAGTCCATGGCCTCATATTATGA
AGCATAAGGATATCATTTACAGCAATATACAGTGCGAAGTTGGAAATGGTACCATCACTGCCTTTTGTCTGAGGTGTGGTTTGGCTCCTCTCCTCTCAATCTTATTTTCT
CCCGCTTGTTCGCCATTGGCAACAGCAAAGATGCCTCCATTGCTGATGTTGGAACTCTCTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACATTCACAACCAGTGGAAGAGGGTGGTCTCGACTTATTTGACATAAAGCATCGTATCAAATCTCTCTTTGCGAAGTGGTTTTGGCGCTTTCAACTAGAAAAGGG
AGCCTTATGGAGAAATCTCATCAAGGCAAAGTATGGTTCCCACCATTTTGGCCGTAAGCCTACCATCCATTGGGAATCCACAAATAGAAGTCCATGGCCTCATATTATGA
AGCATAAGGATATCATTTACAGCAATATACAGTGCGAAGTTGGAAATGGTACCATCACTGCCTTTTGTCTGAGGTGTGGTTTGGCTCCTCTCCTCTCAATCTTATTTTCT
CCCGCTTGTTCGCCATTGGCAACAGCAAAGATGCCTCCATTGCTGATGTTGGAACTCTCTTCATGA
Protein sequenceShow/hide protein sequence
MAHSQPVEEGGLDLFDIKHRIKSLFAKWFWRFQLEKGALWRNLIKAKYGSHHFGRKPTIHWESTNRSPWPHIMKHKDIIYSNIQCEVGNGTITAFCLRCGLAPLLSILFS
PACSPLATAKMPPLLMLELSS