; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G14330 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G14330
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationClcChr03:25618303..25619298
RNA-Seq ExpressionClc03G14330
SyntenyClc03G14330
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW25440.1 Preprotein translocase subunit SECY, chloroplastic [Vitis vinifera]1.1e-2330.83Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQK-----------KLNGHRNARHEGDFSHT
        DWW++  + GW G+ F++KLK +K  LK+W +  FG +      ++KT S    M     ++K   S   ++            L G   ++ EG     
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQK-----------KLNGHRNARHEGDFSHT

Query:  --LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNL
          + + P   E +  LD+P    E+ + V  L   KT G  G+    +++ W++ K+DL + F ++ H  G+ NQ  L+KV        Q AF++GR  L
Subjt:  --LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNL

Query:  DPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
        D  LIAN+++++  R   EGV  K + ++A+D V   +LD +L+ KGF  KWR
Subjt:  DPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

RVW38032.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]4.3e-2330.8Show/hide
Query:  WWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEESR
        WW++    GW G+ F++KL+ +K  LK W + +FG ++S K                          R  +KL  + +   E      L + P + E + 
Subjt:  WWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEESR

Query:  FLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRK
         L+ P    EI+  +  +  +K  G  G+    F+  W + K+DL K          L+ +++ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R 
Subjt:  FLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRK

Query:  KTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
          EGV  K + ++A+D V  D+LD +L++KGFG +WR
Subjt:  KTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

RVW55658.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.6e-2326.77Show/hide
Query:  EDWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSA------------QKKTPSARQCMTCAIPSKKI-----------------------
        + WW      GW G+ F+ KL+ +K +LKEW + +FG++  +K +            Q    S+   +  A+  +++                       
Subjt:  EDWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSA------------QKKTPSARQCMTCAIPSKKI-----------------------

Query:  -CSSCRLQKKLNGHRNAR---------------------------------HEGD--FSHTLSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQY
         C+S    K  NG RN +                                 H G+      L + P + E +  LD P I  EI   +  L  +K LG  
Subjt:  -CSSCRLQKKLNGHRNAR---------------------------------HEGD--FSHTLSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQY

Query:  GYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ---------------LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQ
        G+    F+  W++ K+DL +  + + H  G+ NQ               L+ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R   EGV +K + +
Subjt:  GYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ---------------LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQ

Query:  RAFDKVGLDYLDEMLKVKGFGDKWR
        +A+D V  D+LD++L+ KGF  +WR
Subjt:  RAFDKVGLDYLDEMLKVKGFGDKWR

RVW71406.1 Uridylate kinase [Vitis vinifera]2.7e-2531.67Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEES
        DWW++  + GW  + F++KLK +K  LK+W +  FG +  +K+                    I S+     ++ G             L + P + E +
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEES

Query:  RFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDS
         +LD P I  E+ L V  L   K  G  G+    ++  WN+ K++L + F ++ H  G+ NQ  L+KVL  TI   Q AF++GR  LD  LIANK++++ 
Subjt:  RFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDS

Query:  HRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
         R   EGV  K + ++A+D V   +LD +L+ K F  KWR
Subjt:  HRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

RVW90395.1 hypothetical protein CK203_045762 [Vitis vinifera]1.7e-2429.03Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQ------KKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHT-----
        DWW      GW G+ F+++L+ +K  LKEW + +FG ++ +K  +      ++    RQ        +  C+S    K  NG RN ++  +  +      
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQ------KKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHT-----

Query:  ------------------------------LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGL
                                      L + P + E +  LD P    EI   +  L  +K  G  G+    F++ W++ K+DLS    +QD+    
Subjt:  ------------------------------LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGL

Query:  SNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
          +L+ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R   EGV  K + ++A+D V  D+LD +L+ KGF  +WR
Subjt:  SNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

TrEMBL top hitse value%identityAlignment
A0A438CQF2 Preprotein translocase subunit SECY, chloroplastic5.5e-2430.83Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQK-----------KLNGHRNARHEGDFSHT
        DWW++  + GW G+ F++KLK +K  LK+W +  FG +      ++KT S    M     ++K   S   ++            L G   ++ EG     
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQK-----------KLNGHRNARHEGDFSHT

Query:  --LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNL
          + + P   E +  LD+P    E+ + V  L   KT G  G+    +++ W++ K+DL + F ++ H  G+ NQ  L+KV        Q AF++GR  L
Subjt:  --LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNL

Query:  DPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
        D  LIAN+++++  R   EGV  K + ++A+D V   +LD +L+ KGF  KWR
Subjt:  DPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

A0A438DRE2 LINE-1 retrotransposable element ORF2 protein2.1e-2330.8Show/hide
Query:  WWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEESR
        WW++    GW G+ F++KL+ +K  LK W + +FG ++S K                          R  +KL  + +   E      L + P + E + 
Subjt:  WWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEESR

Query:  FLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRK
         L+ P    EI+  +  +  +K  G  G+    F+  W + K+DL K          L+ +++ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R 
Subjt:  FLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRK

Query:  KTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
          EGV  K + ++A+D V  D+LD +L++KGFG +WR
Subjt:  KTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

A0A438F6L0 Transposon TX1 uncharacterized 149 kDa protein2.7e-2326.77Show/hide
Query:  EDWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSA------------QKKTPSARQCMTCAIPSKKI-----------------------
        + WW      GW G+ F+ KL+ +K +LKEW + +FG++  +K +            Q    S+   +  A+  +++                       
Subjt:  EDWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSA------------QKKTPSARQCMTCAIPSKKI-----------------------

Query:  -CSSCRLQKKLNGHRNAR---------------------------------HEGD--FSHTLSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQY
         C+S    K  NG RN +                                 H G+      L + P + E +  LD P I  EI   +  L  +K LG  
Subjt:  -CSSCRLQKKLNGHRNAR---------------------------------HEGD--FSHTLSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQY

Query:  GYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ---------------LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQ
        G+    F+  W++ K+DL +  + + H  G+ NQ               L+ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R   EGV +K + +
Subjt:  GYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ---------------LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQ

Query:  RAFDKVGLDYLDEMLKVKGFGDKWR
        +A+D V  D+LD++L+ KGF  +WR
Subjt:  RAFDKVGLDYLDEMLKVKGFGDKWR

A0A438GGS3 Uridylate kinase1.3e-2531.67Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEES
        DWW++  + GW  + F++KLK +K  LK+W +  FG +  +K+                    I S+     ++ G             L + P + E +
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEES

Query:  RFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDS
         +LD P I  E+ L V  L   K  G  G+    ++  WN+ K++L + F ++ H  G+ NQ  L+KVL  TI   Q AF++GR  LD  LIANK++++ 
Subjt:  RFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQ--LKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDS

Query:  HRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
         R   EGV  K + ++A+D V   +LD +L+ K F  KWR
Subjt:  HRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

A0A438I108 Uncharacterized protein8.4e-2529.03Show/hide
Query:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQ------KKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHT-----
        DWW      GW G+ F+++L+ +K  LKEW + +FG ++ +K  +      ++    RQ        +  C+S    K  NG RN ++  +  +      
Subjt:  DWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQ------KKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHT-----

Query:  ------------------------------LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGL
                                      L + P + E +  LD P    EI   +  L  +K  G  G+    F++ W++ K+DLS    +QD+    
Subjt:  ------------------------------LSFGPFNSEESRFLDEPLIIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGL

Query:  SNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR
          +L+ VL  TI   Q AF+QGRQ LD  LIAN+I+++  R   EGV  K + ++A+D V  D+LD +L+ KGF  +WR
Subjt:  SNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G20520.1 RNA binding;RNA-directed DNA polymerases7.3e-0528.21Show/hide
Query:  QLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKK-TEG-VAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKW
        +LK ++   I   Q++F+ GR + D  +   + +    RKK  +G + +K ++++A+D++  DYL++ L   GF + W
Subjt:  QLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKK-TEG-VAIKFEVQRAFDKVGLDYLDEMLKVKGFGDKW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTGAAGATTGGTGGAAAAAACATCCTCTCATAGGCTGGCCAGGCTATGGCTTCATTCAAAAACTCAAAGGCCTGAAATTGGATCTAAAAGAATGGAAGCAGCAAAC
TTTTGGAATCATTGAATCACAGAAATCAGCGCAGAAGAAAACACCTTCAGCAAGGCAATGCATGACATGCGCAATTCCATCAAAGAAAATTTGCTCTTCCTGCCGGCTGC
AGAAGAAATTAAATGGCCACAGAAATGCAAGGCATGAAGGAGATTTCTCCCACACTCTATCTTTTGGTCCCTTCAATAGTGAAGAAAGTAGGTTCCTTGACGAGCCTCTC
ATAATAGGTGAGATTTGGTTAGTGGTTAAGGCTTTGGGCACCAACAAAACCTTGGGGCAATATGGTTACATTGCGGAATTCTTTAAAAAGTCATGGAACATTGAAAAGGA
TGACCTGTCTAAACACTTTGTTGTACAAGATCATTGCACAGGTCTCTCAAACCAACTTAAGAAAGTTCTACCAACCACCATTTCAAAATACCAATCTGCTTTTTTGCAAG
GAAGACAAAATTTGGATCCTTCCCTTATTGCCAACAAAATAATTGAAGATTCGCATAGAAAGAAGACTGAAGGAGTGGCCATCAAATTCGAAGTGCAAAGAGCCTTTGAC
AAGGTGGGTTTGGATTACCTTGATGAAATGTTGAAGGTCAAGGGTTTTGGTGACAAATGGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTGAAGATTGGTGGAAAAAACATCCTCTCATAGGCTGGCCAGGCTATGGCTTCATTCAAAAACTCAAAGGCCTGAAATTGGATCTAAAAGAATGGAAGCAGCAAAC
TTTTGGAATCATTGAATCACAGAAATCAGCGCAGAAGAAAACACCTTCAGCAAGGCAATGCATGACATGCGCAATTCCATCAAAGAAAATTTGCTCTTCCTGCCGGCTGC
AGAAGAAATTAAATGGCCACAGAAATGCAAGGCATGAAGGAGATTTCTCCCACACTCTATCTTTTGGTCCCTTCAATAGTGAAGAAAGTAGGTTCCTTGACGAGCCTCTC
ATAATAGGTGAGATTTGGTTAGTGGTTAAGGCTTTGGGCACCAACAAAACCTTGGGGCAATATGGTTACATTGCGGAATTCTTTAAAAAGTCATGGAACATTGAAAAGGA
TGACCTGTCTAAACACTTTGTTGTACAAGATCATTGCACAGGTCTCTCAAACCAACTTAAGAAAGTTCTACCAACCACCATTTCAAAATACCAATCTGCTTTTTTGCAAG
GAAGACAAAATTTGGATCCTTCCCTTATTGCCAACAAAATAATTGAAGATTCGCATAGAAAGAAGACTGAAGGAGTGGCCATCAAATTCGAAGTGCAAAGAGCCTTTGAC
AAGGTGGGTTTGGATTACCTTGATGAAATGTTGAAGGTCAAGGGTTTTGGTGACAAATGGAGGTGA
Protein sequenceShow/hide protein sequence
MPEDWWKKHPLIGWPGYGFIQKLKGLKLDLKEWKQQTFGIIESQKSAQKKTPSARQCMTCAIPSKKICSSCRLQKKLNGHRNARHEGDFSHTLSFGPFNSEESRFLDEPL
IIGEIWLVVKALGTNKTLGQYGYIAEFFKKSWNIEKDDLSKHFVVQDHCTGLSNQLKKVLPTTISKYQSAFLQGRQNLDPSLIANKIIEDSHRKKTEGVAIKFEVQRAFD
KVGLDYLDEMLKVKGFGDKWR