; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc03G14580 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G14580
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr03:25975268..25976011
RNA-Seq ExpressionClc03G14580
SyntenyClc03G14580
Gene Ontology termsNA
InterPro domainsIPR028919 - Viral movement protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051217.1 polyprotein [Cucumis melo var. makuwa]4.5e-7681.56Show/hide
Query:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL
        M CENGSQAF LI +NP +    +KRF TMLN+GMIQIGVKTLTTKI SNASIILCV D RNDNFE SILGLVE+ LSDGPMFFNIFPNITMSLFHPKL 
Subjt:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL

Query:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI
        ESLVLIA+VQGFEQLP+GT PISLMWRTCYKLQGSA P AL+ESPQGKTVFFQTDFENSKVAVQKVS+WD+VV K  ++
Subjt:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI

KAG6588194.1 hypothetical protein SDJN03_16759, partial [Cucurbita argyrosperma subsp. sororia]3.9e-6456.1Show/hide
Query:  MPTFLKPCCSSNFGGS---HALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNV
        M TFLKPC SS   G    HALD+EE+IKKG+NLL WKIPKVPT+KIYK  PF F SDPSIKTK+  M+C NG+QA  LI E+PF+  L  KRFY+M NV
Subjt:  MPTFLKPCCSSNFGGS---HALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNV

Query:  GMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQ
        GMIQIG KTLT KIP NA+I LCV D R + FE SILG+VE+ L                                         T+PI L WRTCYKLQ
Subjt:  GMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQ

Query:  GSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI
         SAL +AL+ES  G+TVFFQTDFENS VAV KVS WDDV+ KV ++
Subjt:  GSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI

KGN66494.1 hypothetical protein Csa_006902 [Cucumis sativus]1.6e-10579.84Show/hide
Query:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM
        M TF   C SSNF GGSH+LDSEEYIKKG NLLKWKIPK+PTTKIYK  PF FFSDP IKTKEETM CENGSQ F LIS NP +    +KRFYT LN+GM
Subjt:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM

Query:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS
        IQIGVKTLTTKIPSNASIILCV D RNDNFE SILGLVES L DGP+FFNIFPNITM +FHPKLLES VLIA+VQGFEQLP+GT PISLMWRTCYKLQ S
Subjt:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS

Query:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH
        ALP AL+ESPQGKTVFFQT+FENSKVA QKVS+WD+V+ KVRN  +KH
Subjt:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH

TYK18873.1 polyprotein [Cucumis melo var. makuwa]5.3e-7782.12Show/hide
Query:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL
        M CENGSQAF LI +NP +    +KRF TMLN+GMIQIGVKTLTTKIPSNASIILCV D RNDNFE SILGLVE+ LSDGPMFFNIFPNITMSLFHPKL 
Subjt:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL

Query:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI
        ESLVLIA+VQGFEQLP+GT PISLMWRTCYKLQGSA P AL+ESPQGKTVFFQTDFENSKVAVQKVS+WD+VV K  ++
Subjt:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI

XP_038880673.1 uncharacterized protein LOC120072292 [Benincasa hispida]5.3e-9372.18Show/hide
Query:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM
        M T  KPCCSSNF GGSHALDSEEYIKKG+NLLKWKIPKVPTTKIYKR PFTFFSDPSIKT+EE MSCENGSQAF LI++NP M   ND RFYT +NVGM
Subjt:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM

Query:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS
        IQIGVK +TTKIPSNASIILCV D RN+NFE +ILGLVESNL                                 GFEQLP+GTRPISLMWRTCYKLQ S
Subjt:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS

Query:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH
        ALP+ALLESPQGKTV+FQTD +NSKVAVQKVSKWD+VV K+RNI +KH
Subjt:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH

TrEMBL top hitse value%identityAlignment
A0A0A0LXM3 Uncharacterized protein8.3e-5246.75Show/hide
Query:  MPTFLKPCCSSNFGGSHALDSEEYIKKGDNLLKWKIPKVPTTKIY-KRKPFTFF-----SDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDK-RFYT
        M  F K C S NF G H+L+ EEY++KG +L+KWK+P+VP  KIY +R+   FF     +DPSI+T E  +S  N   +F L  + P       +  F+ 
Subjt:  MPTFLKPCCSSNFGGSHALDSEEYIKKGDNLLKWKIPKVPTTKIY-KRKPFTFF-----SDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDK-RFYT

Query:  MLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTC
         +N+G++QIGVKTLT KIP NASIILC+ D+R +  E S+L LVES L DGP +FN+FPNI +SLF   +   L +  +V+G +++PKG+ PI +  RTC
Subjt:  MLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTC

Query:  YKL-QGSALPDALLESPQGKTVFFQTDF--ENSKVAVQKVSKWDDV
        YKL Q     +AL+ESP GKTVFFQ +   ++    VQKV+ W+ V
Subjt:  YKL-QGSALPDALLESPQGKTVFFQTDF--ENSKVAVQKVSKWDDV

A0A0A0LZS0 Uncharacterized protein7.6e-10679.84Show/hide
Query:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM
        M TF   C SSNF GGSH+LDSEEYIKKG NLLKWKIPK+PTTKIYK  PF FFSDP IKTKEETM CENGSQ F LIS NP +    +KRFYT LN+GM
Subjt:  MPTFLKPCCSSNF-GGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGM

Query:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS
        IQIGVKTLTTKIPSNASIILCV D RNDNFE SILGLVES L DGP+FFNIFPNITM +FHPKLLES VLIA+VQGFEQLP+GT PISLMWRTCYKLQ S
Subjt:  IQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGS

Query:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH
        ALP AL+ESPQGKTVFFQT+FENSKVA QKVS+WD+V+ KVRN  +KH
Subjt:  ALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNITVKH

A0A2G9HI65 Uncharacterized protein3.4e-2937.74Show/hide
Query:  NLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNF
        NL  WK+P+   ++IY+ K F F SD  IK  EE++  + G +   ++S+       + K+ Y  L++GMIQIG+K L T+I  N S ++ V D R++ F
Subjt:  NLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNF

Query:  EASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLES-----PQGKTVFFQTDFENSK
        E S+LG+VES L DG ++F  FPN T+SL  P +++SL+L    +GF+ L KGT  ++L++R  YK+    +P   + S      +G+T  F TD E   
Subjt:  EASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLES-----PQGKTVFFQTDFENSK

Query:  VAVQKVSKWDDV
        + V K   W+ V
Subjt:  VAVQKVSKWDDV

A0A5A7U9X3 Polyprotein2.2e-7681.56Show/hide
Query:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL
        M CENGSQAF LI +NP +    +KRF TMLN+GMIQIGVKTLTTKI SNASIILCV D RNDNFE SILGLVE+ LSDGPMFFNIFPNITMSLFHPKL 
Subjt:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL

Query:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI
        ESLVLIA+VQGFEQLP+GT PISLMWRTCYKLQGSA P AL+ESPQGKTVFFQTDFENSKVAVQKVS+WD+VV K  ++
Subjt:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI

A0A5D3D5V1 Polyprotein2.6e-7782.12Show/hide
Query:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL
        M CENGSQAF LI +NP +    +KRF TMLN+GMIQIGVKTLTTKIPSNASIILCV D RNDNFE SILGLVE+ LSDGPMFFNIFPNITMSLFHPKL 
Subjt:  MSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTKIPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLL

Query:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI
        ESLVLIA+VQGFEQLP+GT PISLMWRTCYKLQGSA P AL+ESPQGKTVFFQTDFENSKVAVQKVS+WD+VV K  ++
Subjt:  ESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDFENSKVAVQKVSKWDDVVSKVRNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAACTTTTCTCAAACCTTGTTGTAGCTCAAATTTTGGAGGAAGCCATGCTTTAGATAGTGAAGAATACATCAAAAAAGGGGATAATCTCTTGAAATGGAAGATCCC
AAAAGTTCCCACAACCAAAATCTACAAAAGAAAGCCATTCACTTTCTTCTCTGATCCATCCATCAAAACCAAAGAAGAAACAATGTCTTGTGAAAATGGGAGCCAAGCTT
TTTGGTTAATATCTGAAAATCCCTTCATGGTTGGTCTCAATGACAAAAGATTCTACACCATGTTGAATGTTGGGATGATTCAAATTGGGGTAAAAACTTTGACCACAAAA
ATACCCTCAAATGCTTCAATTATTCTATGTGTTCTTGACGATAGAAATGACAATTTTGAAGCTTCAATTTTGGGGTTAGTGGAATCAAATCTAAGTGATGGCCCTATGTT
TTTCAACATATTTCCAAACATTACAATGTCTTTGTTTCATCCTAAGTTGTTAGAGTCTTTGGTTTTGATTGCCATTGTTCAAGGTTTTGAGCAGCTTCCTAAAGGGACAA
GACCAATTAGTTTAATGTGGAGGACATGTTACAAGCTACAAGGCAGTGCTTTGCCAGATGCTTTGCTTGAGAGCCCACAAGGAAAAACTGTGTTTTTTCAAACAGATTTT
GAGAATTCCAAGGTTGCTGTCCAGAAGGTCTCAAAATGGGATGACGTTGTTAGCAAAGTTAGGAATATTACAGTGAAGCACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAACTTTTCTCAAACCTTGTTGTAGCTCAAATTTTGGAGGAAGCCATGCTTTAGATAGTGAAGAATACATCAAAAAAGGGGATAATCTCTTGAAATGGAAGATCCC
AAAAGTTCCCACAACCAAAATCTACAAAAGAAAGCCATTCACTTTCTTCTCTGATCCATCCATCAAAACCAAAGAAGAAACAATGTCTTGTGAAAATGGGAGCCAAGCTT
TTTGGTTAATATCTGAAAATCCCTTCATGGTTGGTCTCAATGACAAAAGATTCTACACCATGTTGAATGTTGGGATGATTCAAATTGGGGTAAAAACTTTGACCACAAAA
ATACCCTCAAATGCTTCAATTATTCTATGTGTTCTTGACGATAGAAATGACAATTTTGAAGCTTCAATTTTGGGGTTAGTGGAATCAAATCTAAGTGATGGCCCTATGTT
TTTCAACATATTTCCAAACATTACAATGTCTTTGTTTCATCCTAAGTTGTTAGAGTCTTTGGTTTTGATTGCCATTGTTCAAGGTTTTGAGCAGCTTCCTAAAGGGACAA
GACCAATTAGTTTAATGTGGAGGACATGTTACAAGCTACAAGGCAGTGCTTTGCCAGATGCTTTGCTTGAGAGCCCACAAGGAAAAACTGTGTTTTTTCAAACAGATTTT
GAGAATTCCAAGGTTGCTGTCCAGAAGGTCTCAAAATGGGATGACGTTGTTAGCAAAGTTAGGAATATTACAGTGAAGCACTAA
Protein sequenceShow/hide protein sequence
MPTFLKPCCSSNFGGSHALDSEEYIKKGDNLLKWKIPKVPTTKIYKRKPFTFFSDPSIKTKEETMSCENGSQAFWLISENPFMVGLNDKRFYTMLNVGMIQIGVKTLTTK
IPSNASIILCVLDDRNDNFEASILGLVESNLSDGPMFFNIFPNITMSLFHPKLLESLVLIAIVQGFEQLPKGTRPISLMWRTCYKLQGSALPDALLESPQGKTVFFQTDF
ENSKVAVQKVSKWDDVVSKVRNITVKH