CuGenDBv2

Gene ID	Clc03G15260
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposable element Tf2
Genome location	ClcChr03:27098781..27099805
RNA-Seq Expression	Clc03G15260
Synteny	Clc03G15260
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]

2.5e-89

91.53

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV++QRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSL IKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPEDASPASVN+VDDLDYDP+ G+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

KAA0056777.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

1.3e-90

92.66

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Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNNVDD DYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

KAA0063832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

3.9e-90

92.09

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Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNN DD DYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

KAA0068172.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]

4.6e-91

93.22

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Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNNVDDLDYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

TYK28077.1 polyprotein [Cucumis melo var. makuwa]

3.9e-90

92.09

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV++QRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSL IKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPEDASPASVN+VDDLDYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SR64 Polyprotein

1.2e-89

91.53

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV++QRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSL IKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPEDASPASVN+VDDLDYDP+ G+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

A0A5A7UVN1 Retrotransposable element Tf2

6.5e-91

92.66

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNNVDD DYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

A0A5A7V6D1 Retrotransposable element Tf2

1.9e-90

92.09

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNN DD DYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

A0A5A7VIK9 Retrotransposable element Tf2

2.2e-91

93.22

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV+VQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSLRIKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPED SPASVNNVDDLDYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

A0A5D3DW87 Polyprotein

1.9e-90

92.09

Show/hide

Query:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE
        MYFGLSEEIFPV++QRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFK LSKSL IKWWEK+NYSHLEVNKIKDWFKANIHLQDMTRQE
Subjt:  MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQE

Query:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY
        DEAFLLTKNAVM+ L GASTQQEFNSVVNNVVVNLSDDN++LPEDASPASVN+VDDLDYDP+EG+DINDPF+DTQPY
Subjt:  DEAFLLTKNAVMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGTACTTTGGACTCTCCGAAGAAATATTTCCGGTAAAAGTTCAACGATCATATCACCTTTTTCAACAAAGTATCTATTCGTCGCCTCTTTCAAAGACGTTTAGATTTGC
TTTGTATTTCCAAATTCCCTGGATCTTTTGCTGGAATTTCCAGCTAGGACCTTCAGGAAACTTCAAAACTCTGAGTAAATCCCTCAGAATCAAATGGTGGGAAAAGTATA
ATTACTCCCATCTCGAAGTCAATAAAATCAAGGATTGGTTTAAAGCCAATATTCATCTCCAGGATATGACTAGGCAAGAGGACGAAGCCTTTCTCCTCACTAAAAACGCA
GTCATGACCAACCTTGTCGGAGCAAGCACTCAACAGGAATTCAATTCTGTTGTCAATAACGTCGTTGTAAACCTTTCGGACGATAACAACGAATTACCGGAGGACGCTTC
CCCAGCCTCCGTTAATAACGTCGATGACCTAGATTATGATCCGTTCGAGGGCATCGACATCAACGACCCATTTATAGACACGCAACCATATTAGTCTAAAATGTGGTATT
TCAAGTGTATTTTAATTATCTATGTACATTTATGTAAATTAATTTGTTTAAATTTTATCGCATTTATTTAGATAAGGTCATTGTATTCCGACCTTATCCTTGCTTTTACC
AGTTTGCTGATCTCGACCATCTTCAAAAAGAACATTTGTAAGAGAAGACTCCATGATGAAGAAGATACACTTCTGCAGAGGACTCACCAACCTCAGGCAGCGCAGTCGGC
GTAAAGGAATAACTCTAAATGGGATTATTTCCAGGAGAATTCTTGAGAAATTTATTTCGATTTTTGTAGCAGGGCCTACGGGCGCTCCATTGGCAGCCAGGCGGGAAGCC
GTAGTAAGACCAGCTTGGGAGCATGTGCGCTACAAAGAAAGAAATTAATCTATCAAAAATTATATTCCATGCCAAGCAGAAGACAATCGGGTGACGTCATTATCTTCCCC
AGCAAGTTTTCACTTTGAAGAAAAGGACAAAGCAG

Protein sequence

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MYFGLSEEIFPVKVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPSGNFKTLSKSLRIKWWEKYNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA
VMTNLVGASTQQEFNSVVNNVVVNLSDDNNELPEDASPASVNNVDDLDYDPFEGIDINDPFIDTQPY

Clc03G15260 (gene) of Watermelon (cordophanus) v2 genome