CuGenDBv2

Gene ID	Clc03G19045
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Genome location	ClcChr03:31277217..31279510
RNA-Seq Expression	Clc03G19045
Synteny	Clc03G19045
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]

3.5e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

KAA0064810.1 retrotransposon protein [Cucumis melo var. makuwa]

1.2e-31

54.7

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIAKM GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

KAA0065477.1 retrotransposon protein [Cucumis melo var. makuwa]

3.5e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

KAA0067583.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-31

54.7

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AKEL + P  YYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]

3.5e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TRV1 Retrotransposon protein

1.7e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

A0A5A7VCA3 Retrotransposon protein

5.7e-32

54.7

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIAKM GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

A0A5A7VHM3 Retrotransposon protein

7.5e-32

54.7

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AKEL + P  YYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRHIP--YYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

A0A5D3CWL2 Retrotransposon protein

1.7e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

A0A5D3DCZ1 Retrotransposon protein

1.7e-31

53.85

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Query:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG
        G  RPG+L+ ++ MM +++PGC ++ +  ++ R++TLKR + AIA+M GP CSGFGWN + KCI  E E+FD WV+SHP+AK L  +  PYYDEL  VFG
Subjt:  GLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKEL--RHIPYYDELAIVFG

Query:  KDRATGSYATTTAEVGS
        +DRATG +A T A+VGS
Subjt:  KDRATGSYATTTAEVGS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.1 unknown protein

5.0e-04

23.81

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Query:  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHIPYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D+++K HP A+   ++ +P Y++L  +F      G D      A  T+E  +      
Subjt:  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHIPYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEE

Query:  EKEYI
        ++  I
Subjt:  EKEYI

AT2G24960.2 unknown protein

5.0e-04

23.81

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Query:  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHIPYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEE
        L  R   L + Y  +  +L     GF W+  R  I  +  ++D+++K HP A+   ++ +P Y++L  +F      G D      A  T+E  +      
Subjt:  LESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAK--ELRHIPYYDELAIVF------GKDRATGSYATTTAEVGSEPVMEE

Query:  EKEYI
        ++  I
Subjt:  EKEYI

Sequences

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CDS sequence

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ATGAGGAGAACAGAATCTTGGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGGGACTTTCCCGACCTGGATTCCTATCAAACATACTATG
GATGATGGAGCAGAGGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACCCTGAAAAGACAGTACAGCGCGATCGCTAAAATGTTGGGTC
CAGGCTGTAGTGGGTTTGGGTGGAATGCGAAGCGCAAATGTATTGATTGTGAGGCAGAGATATTTGACGCATGGGTCAAGAGTCATCCGAGTGCAAAAGAATTGCGCCAT
ATTCCATACTATGATGAATTGGCCATCGTATTCGGCAAAGACAGAGCCACAGGGAGTTATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAA
GGAGTACATCCTGAACAACCACATAATCCTTCCTCAGATTTCCTTTCAGGCAAGTTCTTTCTCTCCCTCGCTCTGTTGCTTCCCTGTTTCTGCATTTCAAAAAATGGTTC
AAATTGCGGAGAAGGGGAAAGATGTTGTATTCTTTTGA

mRNA sequence

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Protein sequence

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MRRTESWWSVWSSVCSLDTGELITGLSRPGFLSNILWMMEQRIPGCSIQVSPHLESRVRTLKRQYSAIAKMLGPGCSGFGWNAKRKCIDCEAEIFDAWVKSHPSAKELRH
IPYYDELAIVFGKDRATGSYATTTAEVGSEPVMEEEKEYILNNHIILPQISFQASSFSPSLCCFPVSAFQKMVQIAEKGKDVVFF

Clc03G19045 (gene) of Watermelon (cordophanus) v2 genome