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Clc03G19400 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G19400
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein transport protein Sec24-like
Genome locationClcChr03:31619841..31622244
RNA-Seq ExpressionClc03G19400
SyntenyClc03G19400
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0006996 - organelle organization (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0012505 - endomembrane system (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050961.1 protein transport protein Sec24-like [Cucumis melo var. makuwa]1.0e-0356.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

XP_004135758.1 protein transport protein Sec24-like At3g07100 [Cucumis sativus]7.6e-0456.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RP +P MP N MPFP SS P V SG  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

XP_008450519.1 PREDICTED: protein transport protein Sec24-like At3g07100 isoform X1 [Cucumis melo]1.0e-0356.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

XP_016900967.1 PREDICTED: protein transport protein Sec24-like At3g07100 isoform X2 [Cucumis melo]1.0e-0356.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

TrEMBL top hitse value%identityAlignment
A0A0A0LW45 Uncharacterized protein3.7e-0456.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RP +P MP N MPFP SS P V SG  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

A0A1S4DYA6 protein transport protein Sec24-like At3g07100 isoform X14.8e-0456.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

A0A1S4DYB0 protein transport protein Sec24-like At3g07100 isoform X24.8e-0456.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

A0A5A7UBK7 Protein transport protein Sec24-like4.8e-0456.6Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR
        SPFS+S  +V SDT   RPA+P MP N MPFP SS P V  G  GFR +  GR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGR

A0A6J1DQK7 protein transport protein Sec24-like At3g071008.2e-0459.57Show/hide
Query:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFR
        SPFS+S  +V SD    RP SP MP N MPFP SS P V SG  GFR
Subjt:  SPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCCTTTTCAACCTCTAGTCTTATAGTTGAATCAGACACCATTTGTTCCAGACCTGCCTCTCCTACTATGCCCCTAAACATAATGCCTTTTCCTCTATCTTCTAG
TCCTACAGTTACATCAGGGTGTCGTGGGTTTAGACTTGTGCTACTAGGGAGAGGCGTTGGCTTTCTAAGATCACTGATCTCTCCTCTCCTCTTCTCTCTCTCCTCTCTTC
TCTCCCTCTCACTTGCATTGCAGGCTTTCGTTGTTTCCCACTTCGGATCCGCCCAGCTCTTCGATCCCACTGTGTTCGTTACTGCTTGCAGACCCTCGTACACAAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCCTTTTCAACCTCTAGTCTTATAGTTGAATCAGACACCATTTGTTCCAGACCTGCCTCTCCTACTATGCCCCTAAACATAATGCCTTTTCCTCTATCTTCTAG
TCCTACAGTTACATCAGGGTGTCGTGGGTTTAGACTTGTGCTACTAGGGAGAGGCGTTGGCTTTCTAAGATCACTGATCTCTCCTCTCCTCTTCTCTCTCTCCTCTCTTC
TCTCCCTCTCACTTGCATTGCAGGCTTTCGTTGTTTCCCACTTCGGATCCGCCCAGCTCTTCGATCCCACTGTGTTCGTTACTGCTTGCAGACCCTCGTACACAAGGTAA
Protein sequenceShow/hide protein sequence
MSPFSTSSLIVESDTICSRPASPTMPLNIMPFPLSSSPTVTSGCRGFRLVLLGRGVGFLRSLISPLLFSLSSLLSLSLALQAFVVSHFGSAQLFDPTVFVTACRPSYTR