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Clc03G19680 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc03G19680
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionPre-rRNA-processing protein ESF2
Genome locationClcChr03:31842773..31843429
RNA-Seq ExpressionClc03G19680
SyntenyClc03G19680
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031794.1 hypothetical protein E6C27_scaffold848G00350 [Cucumis melo var. makuwa]6.2e-0560.78Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRD-GLKG
        M KLRALKGN++V SRE F +++T+KK I+AR++EID LELE   D  LKG
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRD-GLKG

KAA0037601.1 pre-rRNA-processing protein ESF2 [Cucumis melo var. makuwa]5.1e-0754.93Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAKRDGLKGIFVDLIRKESISW
        MG LRALKGN RV +REVF +V TRKKEI A +E+        +  +  + +R+ LKG F DLIRKESISW
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAKRDGLKGIFVDLIRKESISW

KAA0057384.1 hypothetical protein E6C27_scaffold280G002530 [Cucumis melo var. makuwa]7.8e-0840.21Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDG--------LKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL
        M KLRALK  +RV + EVFGD++ + KEI+ R+E+IDA EL+   DG        LK  F ++I+ E+ISW       W    +C T  F++  +G+
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDG--------LKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL

TYK03178.1 hypothetical protein E5676_scaffold11G00830 [Cucumis melo var. makuwa]6.6e-0747.89Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDGL--------KGIFVDLIRKESISW
        M KLRAL   +R  +R+VFGD++ +KKE++AR+ EIDALELE   D          KG   ++IRKE++SW
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDGL--------KGIFVDLIRKESISW

TYK04731.1 UHRF1-binding protein 1-like protein [Cucumis melo var. makuwa]3.4e-1146.24Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAKRDGLKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKL
        MGKLR L+GN++V +R+VFGD++ RKKEIL R+EEI  LE        L  +R+ LK +FV+LIRKE++SW       W+    C T  F ++
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAKRDGLKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKL

TrEMBL top hitse value%identityAlignment
A0A5A7SKV1 Uncharacterized protein3.0e-0560.78Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRD-GLKG
        M KLRALKGN++V SRE F +++T+KK I+AR++EID LELE   D  LKG
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRD-GLKG

A0A5A7T7P5 Pre-rRNA-processing protein ESF22.5e-0754.93Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAKRDGLKGIFVDLIRKESISW
        MG LRALKGN RV +REVF +V TRKKEI A +E+        +  +  + +R+ LKG F DLIRKESISW
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEE--------IDALELEAKRDGLKGIFVDLIRKESISW

A0A5A7UQK0 Uncharacterized protein3.8e-0840.21Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDG--------LKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL
        M KLRALK  +RV + EVFGD++ + KEI+ R+E+IDA EL+   DG        LK  F ++I+ E+ISW       W    +C T  F++  +G+
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDG--------LKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKLKDGL

A0A5D3BW32 Uncharacterized protein3.2e-0747.89Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDGL--------KGIFVDLIRKESISW
        M KLRAL   +R  +R+VFGD++ +KKE++AR+ EIDALELE   D          KG   ++IRKE++SW
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDGL--------KGIFVDLIRKESISW

A0A5D3BYG6 UHRF1-binding protein 1-like protein1.6e-1146.24Show/hide
Query:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAKRDGLKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKL
        MGKLR L+GN++V +R+VFGD++ RKKEIL R+EEI  LE        L  +R+ LK +FV+LIRKE++SW       W+    C T  F ++
Subjt:  MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALE--------LEAKRDGLKGIFVDLIRKESISWLH----VWLTYDSCQTLGFFKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACTAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAA
ATCGATGCTTTGGAGCTGGAAGCCAAGAGGGATGGTTTAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATAC
GACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAAATCAGTGAGGAGTTCTCTCGTATTGCCGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGGAAGCTGAGGGCCCTTAAAGGAAATGTTAGAGTTCGGAGTAGAGAAGTCTTTGGAGACGTCAAGACTAGAAAGAAAGAGATCCTTGCTAGAATGGAGGAA
ATCGATGCTTTGGAGCTGGAAGCCAAGAGGGATGGTTTAAAAGGGATTTTTGTAGACTTGATCAGGAAAGAGAGTATTAGTTGGCTGCACGTGTGGCTCACATAC
GACTCTTGCCAGACTCTGGGGTTCTTTAAATTGAAAGATGGGCTTCCTCTTGAAATCAGTGAGGAGTTCTCTCGTATTGCCGTGTAA
Protein sequenceShow/hide protein sequence
MGKLRALKGNVRVRSREVFGDVKTRKKEILARMEEIDALELEAKRDGLKGIFVDLIRKESISWLHVWLTYDSCQTLGFFKLKDGLPLEISEEFSRIAV