; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G00010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA-binding storekeeper protein-related transcriptional regulator
Genome locationClcChr04:56066..56914
RNA-Seq ExpressionClc04G00010
SyntenyClc04G00010
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
InterPro domainsIPR007592 - GLABROUS1 enhancer-binding protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054121.1 hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa]1.5e-0728.23Show/hide
Query:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------
        M   K     S G  KK  R+K  F WSK +EL +L+KL+EF+S+N +      +FY ++      +VS+ Q+   I  L+ +YL++K            
Subjt:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------

Query:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN
         +DD D+N++ R    ELS ++W G+ +E    + +K +   +  Y + +  E  G  V+    S  +A KKD +H   +E      + + T Q+ QL  
Subjt:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN

Query:  NIHNTQTSN
        ++   + +N
Subjt:  NIHNTQTSN

KAG6607616.1 hypothetical protein SDJN03_00958, partial [Cucurbita argyrosperma subsp. sororia]8.0e-4653.09Show/hide
Query:  MNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS-KDDDLDWNNEIRV
        M H +YEAP+C EL K + ++ S  WSK+DE+IVLEKL EF  Q+K+ANYYT QFY  V+K LSV + +NQLCYMIYCLRKQYL++ K+ D D      +
Subjt:  MNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDS-KDDDLDWNNEIRV

Query:  RVLELSERIWGGDRNEGWYWAKTKVMRDNNE-QYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQ
        +V+ELS ++W  D        KTKV+ D+   ++LK YVV+ LG   +CL++ +VE IK+DW+ FR VEDEFR++Q RF LQLC+L  ++HNTQ
Subjt:  RVLELSERIWGGDRNEGWYWAKTKVMRDNNE-QYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNNNIHNTQ

XP_022158998.1 probable transcription factor At4g01260 [Momordica charantia]6.0e-0927.6Show/hide
Query:  ESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQ
        E++ +  +K    K+    + +   +P+  E  K   +K  F WS  DE ++L+   EF+ +N +   Y+  FY +V   LSV VS +QL   +Y LRK+
Subjt:  ESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQ

Query:  YLDSKDD-------DLDWNNEIRVRVLELSERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDE
        +L  KD+            N++  ++ E+S  IWG + N       G  W    V R   E +  + V+E +   + C+  +++  I+KDWE  +  +DE
Subjt:  YLDSKDD-------DLDWNNEIRVRVLELSERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDE

Query:  FRTMQHRFTLQL----CQLNN
        +        LQ+    C  NN
Subjt:  FRTMQHRFTLQL----CQLNN

XP_022951915.1 probable transcription factor At1g66420 [Cucurbita moschata]2.5e-0726.36Show/hide
Query:  AATIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSEN
        A+  H       S +     + K +++     +     +    KK ++++    W ++DE+IVL++L +F   N +   Y+  FY +V K L + QVS +
Subjt:  AATIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSEN

Query:  QLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFR
        QL   I   +K+YL +    K++DL ++      V  LS RIWGG R++               +Y K ++  +EE+   ++CL+ S +E  KK+WE   
Subjt:  QLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFR

Query:  FVEDEFRTMQHRFTLQLCQL
         +  E  + + +F  +L +L
Subjt:  FVEDEFRTMQHRFTLQLCQL

XP_038877618.1 STOREKEEPER protein-like [Benincasa hispida]1.6e-0928.89Show/hide
Query:  ELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIR-----VRVLELSER
        E +K  ++K  FRWS  DE  +LE   EF+ +N N   Y+  FY +V   LS +VS +QL   +Y LRK+++ +K +D + NN +R      +V ELS  
Subjt:  ELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLDWNNEIR-----VRVLELSER

Query:  IWGGDRNEG-----------------WYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEF
        IWG D+                      W   +V R   +++     +E +   V  +   ++E ++K+WE  R   +++
Subjt:  IWGGDRNEG-----------------WYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEF

TrEMBL top hitse value%identityAlignment
A0A5A7UKP8 Uncharacterized protein7.2e-0828.23Show/hide
Query:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------
        M   K     S G  KK  R+K  F WSK +EL +L+KL+EF+S+N +      +FY ++      +VS+ Q+   I  L+ +YL++K            
Subjt:  MMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSK------------

Query:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN
         +DD D+N++ R    ELS ++W G+ +E    + +K +   +  Y + +  E  G  V+    S  +A KKD +H   +E      + + T Q+ QL  
Subjt:  -DDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTLQLCQLNN

Query:  NIHNTQTSN
        ++   + +N
Subjt:  NIHNTQTSN

A0A6J1DXL5 probable transcription factor At4g012602.9e-0927.6Show/hide
Query:  ESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQ
        E++ +  +K    K+    + +   +P+  E  K   +K  F WS  DE ++L+   EF+ +N +   Y+  FY +V   LSV VS +QL   +Y LRK+
Subjt:  ESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQ

Query:  YLDSKDD-------DLDWNNEIRVRVLELSERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDE
        +L  KD+            N++  ++ E+S  IWG + N       G  W    V R   E +  + V+E +   + C+  +++  I+KDWE  +  +DE
Subjt:  YLDSKDD-------DLDWNNEIRVRVLELSERIWGGDRNE------GWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDE

Query:  FRTMQHRFTLQL----CQLNN
        +        LQ+    C  NN
Subjt:  FRTMQHRFTLQL----CQLNN

A0A6J1GK86 probable transcription factor At1g664201.2e-0726.36Show/hide
Query:  AATIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSEN
        A+  H       S +     + K +++     +     +    KK ++++    W ++DE+IVL++L +F   N +   Y+  FY +V K L + QVS +
Subjt:  AATIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKML-SVQVSEN

Query:  QLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFR
        QL   I   +K+YL +    K++DL ++      V  LS RIWGG R++               +Y K ++  +EE+   ++CL+ S +E  KK+WE   
Subjt:  QLCYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFR

Query:  FVEDEFRTMQHRFTLQLCQL
         +  E  + + +F  +L +L
Subjt:  FVEDEFRTMQHRFTLQLCQL

A0A6J1I882 probable transcription factor At1g617301.2e-0727.06Show/hide
Query:  TIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLS-VQVSENQL
        T++ + +   S  K K +++  ++    +  N  +     +KK ++++    W ++DE+IVL++L EF   N +   Y+  FY +V K LS  QVS +Q 
Subjt:  TIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLS-VQVSENQL

Query:  CYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFRFV
           I   +K+YL +    K++DL ++      V  LS+RIWG  R++               +Y K ++  +EE+   ++CL+ S +E  KK+WE    +
Subjt:  CYMIYCLRKQYLDS----KDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYV--VEELGFPVECLSASIVEAIKKDWEHFRFV

Query:  EDEFRTMQHRFTLQLCQL
          E  + + +F  +L +L
Subjt:  EDEFRTMQHRFTLQLCQL

SwissProt top hitse value%identityAlignment
Q9SYA9 Probable transcription factor At1g617309.4e-0530Show/hide
Query:  KKTVRQKDSFR--WSKKDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG
        +++V++   F+  WS++DE++VL+ +++F +    + Y  T  FY ++ K +S +VS+NQ    I  LRK+Y+  +  ++  +      +  ELS+ IWG
Subjt:  KKTVRQKDSFR--WSKKDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG

Arabidopsis top hitse value%identityAlignment
AT1G11510.1 DNA-binding storekeeper protein-related transcriptional regulator8.1e-0430.16Show/hide
Query:  KKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLD
        K+ KK      K        E KKT  Q+    W++ DE++VL+ L++       +N  T + Y  V K +S  VS+NQL   +  L+K+Y ++     D
Subjt:  KKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKDDDLD

Query:  WNNEIRV-----RVLELSERIWGGDR
              V     +  ELS+ +WGG R
Subjt:  WNNEIRV-----RVLELSERIWGGDR

AT1G61730.1 DNA-binding storekeeper protein-related transcriptional regulator6.6e-0630Show/hide
Query:  KKTVRQKDSFR--WSKKDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG
        +++V++   F+  WS++DE++VL+ +++F +    + Y  T  FY ++ K +S +VS+NQ    I  LRK+Y+  +  ++  +      +  ELS+ IWG
Subjt:  KKTVRQKDSFR--WSKKDELIVLEKLLEFSSQNKNANYY-TCQFYMYVNKMLSVQVSENQLCYMIYCLRKQYLDSKD-DDLDWNNEIRVRVLELSERIWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGAGGTTTTGTTTTGACCATACTCTCTGCCGCCGCCACCATTCACGACCACCCTGCTCCCGGTGAGTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGCAAGGGATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGAAGGATGAATTAA
TTGTCCTTGAGAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAG
AATCAATTGTGTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCAGA
GAGAATATGGGGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGT
TTCCGGTGGAATGCTTGTCAGCTTCTATTGTCGAGGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTG
CAGCTTTGTCAACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGGAGGTTTTGTTTTGACCATACTCTCTGCCGCCGCCACCATTCACGACCACCCTGCTCCCGGTGAGTCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA
GAAGCAAGGGATGATGAATCACAAAAATTATGAAGCACCCAGTTGTGGTGAGTTGAAGAAGACGGTGAGGCAAAAAGATTCATTCCGATGGAGTAAGAAGGATGAATTAA
TTGTCCTTGAGAAGCTGTTGGAATTTTCAAGCCAAAATAAGAATGCTAATTATTACACTTGTCAATTCTACATGTATGTGAACAAAATGTTAAGTGTTCAAGTGTCAGAG
AATCAATTGTGTTACATGATATATTGTTTGAGAAAACAATATTTAGATTCAAAGGATGATGATTTGGATTGGAATAATGAGATCAGGGTCAGAGTTTTGGAATTATCAGA
GAGAATATGGGGAGGTGATAGGAATGAAGGGTGGTACTGGGCAAAGACAAAAGTGATGAGAGATAATAATGAGCAATATTTGAAAGATTATGTTGTTGAAGAATTAGGGT
TTCCGGTGGAATGCTTGTCAGCTTCTATTGTCGAGGCAATTAAGAAAGATTGGGAACATTTTCGATTTGTTGAGGATGAGTTTCGAACCATGCAACATCGATTTACTTTG
CAGCTTTGTCAACTCAACAACAACATTCATAACACTCAAACTTCTAATTCAAGTACCTCAAACCTTTAG
Protein sequenceShow/hide protein sequence
MIGGFVLTILSAAATIHDHPAPGESKKKKKKKKKKKKKQGMMNHKNYEAPSCGELKKTVRQKDSFRWSKKDELIVLEKLLEFSSQNKNANYYTCQFYMYVNKMLSVQVSE
NQLCYMIYCLRKQYLDSKDDDLDWNNEIRVRVLELSERIWGGDRNEGWYWAKTKVMRDNNEQYLKDYVVEELGFPVECLSASIVEAIKKDWEHFRFVEDEFRTMQHRFTL
QLCQLNNNIHNTQTSNSSTSNL