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Clc04G00060 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00060
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S28
Genome locationClcChr04:173321..178466
RNA-Seq ExpressionClc04G00060
SyntenyClc04G00060
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006869 - lipid transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0005319 - lipid transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4362053.1 hypothetical protein F8388_023905 [Cannabis sativa]4.4e-2591.3Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGFSK
        M+SQIKHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARS  GF K
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGFSK

KAG6603304.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]3.4e-2592.75Show/hide
Query:  KKSGYGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS
        ++S  GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS
Subjt:  KKSGYGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS

KAG7023246.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-24100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-24100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]1.3e-24100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

TrEMBL top hitse value%identityAlignment
A0A6A4LHN8 Ribosomal_S7 domain-containing protein (Fragment)1.8e-2496.83Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS
        MESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD+LTLLESEREARS
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARS

A0A6J1E226 40S ribosomal protein S28-1-like isoform X26.3e-25100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X16.3e-25100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A7J6EUE9 Uncharacterized protein2.2e-2591.3Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGFSK
        M+SQIKHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARS  GF K
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGFSK

A0A803NY45 Uncharacterized protein1.1e-2492.54Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGF
        M+SQIKHAVVVK+MGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREARS  GF
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKGF

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-26.2e-2288.71Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

P46302 40S ribosomal protein S287.4e-2390.32Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q6PBK3 40S ribosomal protein S281.2e-1779.31Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q90YP3 40S ribosomal protein S281.2e-1779.31Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q9SR73 40S ribosomal protein S28-11.6e-2291.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.2e-2391.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.2e-2391.94Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G64140.1 ribosomal protein S284.4e-2388.71Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATCCTAAGTCAAAGTTGCATCTCCATCCTTAGCTATCATGGAGCTTCAGCTCCTCAACGCGTAGCAGCTATCCAGCACAAGGTAGCCTTATCAACTCATGGAAA
CAACCTTCAATGCATAACAGCTCCTCCAATCATAGCAACTCTTCAACACTTGATGGCCTCTCTTACACATGCTATAATATACCCAAAGGATTCTTGTCACCGTTCTCTTC
AGTCCTCACTGTCCCATCACCATAGTCCTTGCCGCATCATCACAGCTTCCATCGTGCCGCATCGTCAATCCTCATTGCCGCATCATCATAGTCCTCACGCCGCAACGTCT
CAGCCCTCTCCGCAACGCGTCGTCACAGCCTTCATAGCACATTGCCGCAGTGTAGGGAAGTCGCGACTTCGCACAGGCAGTCTCGCTCAATCTTGCTATCTCACTCATTC
TCGCTGTCTCGCTGTCTCGCAATCTCGCTCTCGCCGCAATCTCGCTCTCGCAGGTAAGGGACTTACTACCGGGTTATCCTACTTGTCGTGCCCCGTACCCCTAATGTACT
GTGCTACGAAGGGTGTCCCTCGGGATCACCGCCTATGTCCATGTTACAAATGTGATCACTACGTACCCTTGAGTCACTTACGGGTAAAGAGCATGGTGGCCAGGCGTATG
ACTGAGGAAATCCGTGACCGTACCATGGGATCGTTGACATTGCTTCCGCACCTTAGCCTAAGTACTCTTGCTGTAGGTCTTCGTATTAAGGATTTTTCTTTTGTTTTTCG
AGTTAAAAAATCTGGCTACGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTCATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGT
TTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGAGAAGCTAGAAGCCAAAAGGGT
TTCTCTAAGCTCGTCTTCCCTCACCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTGCTCCAAGCTTTCTTTCTGTTTCTGGAACCCTTCTTCTATTCGCCCTCTCTCT
GTTTCCTCCCCCTCTGCAAACCGTCCTCGTTCCTTCACAGTTCGAGCGGAAGAAACCCCATGTCAATATTGCCACAATTGGGCATGTCGATCGACCATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATCCTAAGTCAAAGTTGCATCTCCATCCTTAGCTATCATGGAGCTTCAGCTCCTCAACGCGTAGCAGCTATCCAGCACAAGGTAGCCTTATCAACTCATGGAAA
CAACCTTCAATGCATAACAGCTCCTCCAATCATAGCAACTCTTCAACACTTGATGGCCTCTCTTACACATGCTATAATATACCCAAAGGATTCTTGTCACCGTTCTCTTC
AGTCCTCACTGTCCCATCACCATAGTCCTTGCCGCATCATCACAGCTTCCATCGTGCCGCATCGTCAATCCTCATTGCCGCATCATCATAGTCCTCACGCCGCAACGTCT
CAGCCCTCTCCGCAACGCGTCGTCACAGCCTTCATAGCACATTGCCGCAGTGTAGGGAAGTCGCGACTTCGCACAGGCAGTCTCGCTCAATCTTGCTATCTCACTCATTC
TCGCTGTCTCGCTGTCTCGCAATCTCGCTCTCGCCGCAATCTCGCTCTCGCAGGTAAGGGACTTACTACCGGGTTATCCTACTTGTCGTGCCCCGTACCCCTAATGTACT
GTGCTACGAAGGGTGTCCCTCGGGATCACCGCCTATGTCCATGTTACAAATGTGATCACTACGTACCCTTGAGTCACTTACGGGTAAAGAGCATGGTGGCCAGGCGTATG
ACTGAGGAAATCCGTGACCGTACCATGGGATCGTTGACATTGCTTCCGCACCTTAGCCTAAGTACTCTTGCTGTAGGTCTTCGTATTAAGGATTTTTCTTTTGTTTTTCG
AGTTAAAAAATCTGGCTACGGAATGGAATCACAGATCAAACATGCTGTGGTGGTGAAAGTCATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGT
TTCTTGATGATCAGAATCGTTACATTATGAGGAATGTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGAGAAGCTAGAAGCCAAAAGGGT
TTCTCTAAGCTCGTCTTCCCTCACCCTTCTCCTTCTCCTTCTCCTTCTCCTTCCCCTGCTCCAAGCTTTCTTTCTGTTTCTGGAACCCTTCTTCTATTCGCCCTCTCTCT
GTTTCCTCCCCCTCTGCAAACCGTCCTCGTTCCTTCACAGTTCGAGCGGAAGAAACCCCATGTCAATATTGCCACAATTGGGCATGTCGATCGACCATGCTAA
Protein sequenceShow/hide protein sequence
MSILSQSCISILSYHGASAPQRVAAIQHKVALSTHGNNLQCITAPPIIATLQHLMASLTHAIIYPKDSCHRSLQSSLSHHHSPCRIITASIVPHRQSSLPHHHSPHAATS
QPSPQRVVTAFIAHCRSVGKSRLRTGSLAQSCYLTHSRCLAVSQSRSRRNLALAGKGLTTGLSYLSCPVPLMYCATKGVPRDHRLCPCYKCDHYVPLSHLRVKSMVARRM
TEEIRDRTMGSLTLLPHLSLSTLAVGLRIKDFSFVFRVKKSGYGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARSQKG
FSKLVFPHPSPSPSPSPSPAPSFLSVSGTLLLFALSLFPPPLQTVLVPSQFERKKPHVNIATIGHVDRPC