CuGenDBv2

Gene ID	Clc04G00140
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	exosome complex component RRP43
Genome location	ClcChr04:379879..385855
RNA-Seq Expression	Clc04G00140
Synteny	Clc04G00140
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR027408 - PNPase/RNase PH domain superfamily IPR036345 - Exoribonuclease, PH domain 2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

TYK02492.1 exosome complex component RRP43 isoform X1 [Cucumis melo var. makuwa]

5.5e-57

94.4

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Query:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS
        +ILQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+
Subjt:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS

Query:  VQDCVALTRQRSKELQMILDEAISG
        VQDC+ALTRQRSKELQ+ILDEAISG
Subjt:  VQDCVALTRQRSKELQMILDEAISG

XP_004149399.1 exosome complex component RRP43 isoform X1 [Cucumis sativus]

6.0e-56

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DC+ALTRQRSKELQ+ILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

XP_008460772.1 PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]

1.2e-56

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DC+ALTRQRSKELQ+ILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

XP_008460773.1 PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]

1.2e-56

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DC+ALTRQRSKELQ+ILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

XP_038877146.1 exosome complex component RRP43 isoform X2 [Benincasa hispida]

9.3e-57

95.93

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        L+IPVVALNDDGKV+FVSEEEGGENFEKEPVNKE+RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DCVALTRQRSKELQMILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KYC2 RNase_PH_C domain-containing protein

8.5e-56

93.6

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Query:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS
        I +QIPVVALNDDGKVVFV EEEGGENFEKEPVNKE RKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+
Subjt:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS

Query:  VQDCVALTRQRSKELQMILDEAISG
        VQDC+ALTRQRSKELQ+ILDEAISG
Subjt:  VQDCVALTRQRSKELQMILDEAISG

A0A1S3CD66 exosome complex component RRP43 isoform X1

5.9e-57

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DC+ALTRQRSKELQ+ILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

A0A1S3CEE1 exosome complex component RRP43 isoform X2

5.9e-57

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DC+ALTRQRSKELQ+ILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

A0A5D3BUK6 Exosome complex component RRP43 isoform X1

2.6e-57

94.4

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Query:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS
        +ILQIPVVALNDDG+VVFVSEEEGGENFEKEPVNKEKRKLKLNS+PFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+
Subjt:  IILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSS

Query:  VQDCVALTRQRSKELQMILDEAISG
        VQDC+ALTRQRSKELQ+ILDEAISG
Subjt:  VQDCVALTRQRSKELQMILDEAISG

A0A6J1HVL5 exosome complex component RRP43

8.5e-56

95.12

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ
        LQIPVVALNDDGKVVFVSEE+GGENFEKE VNKEKRKLKLNS+PFSLTCLLHK YILADPTAEEESVMETIVTVVLDSS QLVSFYKPGGSVLAYTS+VQ
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQ

Query:  DCVALTRQRSKELQMILDEAISG
        DCVALTRQRSKELQMILDEAISG
Subjt:  DCVALTRQRSKELQMILDEAISG

SwissProt top hits

e value

%identity

Alignment

Q2KHU3 Exosome complex component RRP43

1.3e-05

28.33

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSV
        +Q+P V +N++  +  V+              K+K  L + + P + +  +     ++ DPT EEE +    +TVV+D   +L   +KPGGS L   + +
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSV

Query:  QDCVALTRQRSKELQMILDE
        QDC++    R KE++ ++DE
Subjt:  QDCVALTRQRSKELQMILDE

Q96B26 Exosome complex component RRP43

2.7e-06

27.87

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Query:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSV
        +Q+P V +N++  +  V+              K+K  L + + P + +  +     ++ DPT EEE +    +T+V+D   +L   +KPGGS L   + +
Subjt:  LQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLT-CLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSV

Query:  QDCVALTRQRSKELQMILDEAI
        QDC++    R KE++ ++DE I
Subjt:  QDCVALTRQRSKELQMILDEAI

Arabidopsis top hits

e value

%identity

Alignment

AT1G60080.1 3'-5'-exoribonuclease family protein

9.3e-39

65.57

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Query:  LQIPVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTS
        LQIP+VALND+G++V V+ E+  +N    EKE VNKEKRKL L +IPFSLTC+LHK YILADPT EEES+M+T+VTVVLDSS Q+VSFYK GG+ LAY+S
Subjt:  LQIPVVALNDDGKVVFVSEEEGGEN---FEKEPVNKEKRKLKLNSIPFSLTCLLHKKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTS

Query:  SVQDCVALTRQRSKELQMILDE
        +++ CV L R+R+KEL+ IL E
Subjt:  SVQDCVALTRQRSKELQMILDE

Sequences

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CDS sequence

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ATGAGTGGCCCCAGAGTCGACCATGGTGCTCTTGACCGATCTTTGGTTGACCGATCTTTGGTTCTTCAGTTTGGTGGCAACTTTGGAGGGCTCAGTCCTTTGTTTCAGTT
CATTGGGAAAATTCACGACTGTCATGATTTACGCTGGAAATATTATACAGGCATATGCATAATCCTGCAAATCCCTGTTGTTGCCTTAAATGATGATGGAAAAGTAGTAT
TTGTCTCTGAGGAAGAAGGGGGAGAAAATTTTGAGAAGGAACCTGTCAATAAAGAGAAAAGGAAACTGAAATTGAACTCTATTCCTTTCTCATTAACATGCCTACTCCAC
AAGAAGTACATCTTGGCTGATCCTACTGCAGAGGAGGAGTCCGTGATGGAAACTATTGTGACCGTGGTTTTGGATTCATCTGCTCAACTGGTGTCCTTCTACAAACCGGG
TGGATCTGTTCTCGCTTATACATCATCTGTTCAGGATTGTGTTGCATTGACCAGACAAAGATCAAAAGAACTACAGATGATTTTAGATGAAGCAATTTCTGGGCCGAGCC
AAGGCGGGTGGGGGGTCCCCTCCCCGCCCCCGATGGGGGAATTTCCCCCCATCCCCGCCCTCATCCCACCTAAGATAGGTGGGGACGAGGGTGGGGATTCTTCGTCAGGG
AGACGGGTCGTCGCTGGGGCCCCATTCCTCACGAGAACTGAGAGAGAGCGAGAATCTGCTTCTTGTCTCCCTATCTCAACACCTGACTGTCAGCAAAGCTCTGTGATTAA
ACACGGATGCTCGAAGACTCCAGTGGTGGCGCAGCGTCCGCTACGTAGGATAGAGTCACGAATGACCTTACCAATGTCAACAGACCGGCCTATGCTAAAATAG

mRNA sequence

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Protein sequence

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MSGPRVDHGALDRSLVDRSLVLQFGGNFGGLSPLFQFIGKIHDCHDLRWKYYTGICIILQIPVVALNDDGKVVFVSEEEGGENFEKEPVNKEKRKLKLNSIPFSLTCLLH
KKYILADPTAEEESVMETIVTVVLDSSAQLVSFYKPGGSVLAYTSSVQDCVALTRQRSKELQMILDEAISGPSQGGWGVPSPPPMGEFPPIPALIPPKIGGDEGGDSSSG
RRVVAGAPFLTRTERERESASCLPISTPDCQQSSVIKHGCSKTPVVAQRPLRRIESRMTLPMSTDRPMLK

Clc04G00140 (gene) of Watermelon (cordophanus) v2 genome