CuGenDBv2

Gene ID	Clc04G00160
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Genome location	ClcChr04:394962..397648
RNA-Seq Expression	Clc04G00160
Synteny	Clc04G00160
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0004518 - nuclease activity (molecular function) GO:0005488 - binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR041588 - Integrase zinc-binding domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0037220.1 reverse transcriptase [Cucumis melo var. makuwa]

1.7e-119

62.68

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

1.7e-119

62.68

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

TYK07954.1 reverse transcriptase [Cucumis melo var. makuwa]

6.0e-120

62.97

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Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQAAF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]

6.0e-120

63.9

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++TGPLT LLKK+ +W W  EC AAFE LKK  MEG VLGIADVT+PFEVETDASDFALG VLLQD HPIAYE++KLNDA
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRYA SEKEMLAVVHCLRAWRQYLLG+KFV+KTDNSS+CHFF Q KLSSKQARWQ+                        RKSE AALC+ A LKAS L
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
        +G++REAIR +L ND AAQA+IQL+ EG TR+                      LR+LL+ ECHDT WAGH GWQRTYALLK+GY WPSLRDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ
        CL+CQQDK E  K+A LLEPL +PSR W+S   +       +G +  YQ
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]

7.1e-121

61.81

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFSR+  PLT+LLKKDH W W ++CQ AFE+LK     GPVLG+ DVTKPFEVETDASDFALG VL+Q+ HPIAYE+RKLNDA
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLR WRQYLLGS+FV+KTDNS+ CHFF Q KL++KQARWQ+                        RK EHAALC+ A + +S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTR----------------------ELRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G++R+ I+ HL  D +A+A+++L++ GKTR                      ELR+ L++ECHDT WAGH GWQRTYAL+K+GY WP++RDDIM +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTR----------------------ELRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E AK++GLLEPL VP+RPW+SVS+DFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UXR6 Reverse transcriptase

8.4e-120

62.68

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

A0A5D3BRZ6 Reverse transcriptase

8.4e-120

62.68

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

A0A5D3C4R1 Reverse transcriptase

8.4e-120

62.68

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQ AF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

A0A5D3C9P8 Reverse transcriptase

2.9e-120

62.97

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++  PLT+LLKKD  W W  ECQAAF+ LK+  MEGP+LGIADVTKPFEVETDASD+ALG VLLQ+ HPIAYE+RKLN A
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRY  SEKEMLAVVHCLRAWRQYLLGS FV+KTDNS+ CHFF Q KL+SKQARWQ+                        RK EHAA+CL A L+ S +
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
         G+VR+ +R  L  D AAQ ++ L++ GKTR+                      LR+ L+ ECHDT WAGH GWQRTYALLK+GY WP++RDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG
        CL+CQQDK E  K+AGLL+PL VP+RPW+SVSMDFITHLPKVG
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVG

A0A6J1DLQ6 uncharacterized protein LOC111022320

2.9e-120

63.9

Show/hide

Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA
        +LRSFLGLANYYRRFVEGFS++TGPLT LLKK+ +W W  EC AAFE LKK  MEG VLGIADVT+PFEVETDASDFALG VLLQD HPIAYE++KLNDA
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDA

Query:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL
        ERRYA SEKEMLAVVHCLRAWRQYLLG+KFV+KTDNSS+CHFF Q KLSSKQARWQ+                        RKSE AALC+ A LKAS L
Subjt:  ERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSICHFFAQRKLSSKQARWQD------------------------RKSEHAALCLFAQLKASSL

Query:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT
        +G++REAIR +L ND AAQA+IQL+ EG TR+                      LR+LL+ ECHDT WAGH GWQRTYALLK+GY WPSLRDD+M +TKT
Subjt:  SGTVREAIRTHLVNDTAAQALIQLSEEGKTRE----------------------LRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIMPFTKT

Query:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ
        CL+CQQDK E  K+A LLEPL +PSR W+S   +       +G +  YQ
Subjt:  CLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

9.5e-36

29.16

Show/hide

Query:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN
        ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL   D +K   +ETDASD A+G+VL Q   DD  +P+ Y +
Subjt:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN

Query:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------
         K++ A+  Y+ S+KEMLA++  L+ WR YL  +   F I TD+ ++           + + ARWQ                                  
Subjt:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------

Query:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA
         + SE  ++    Q+   S++   +  + T   NDT    L+  +E+ +  E                       L R ++K+ H+     H G +    
Subjt:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA

Query:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN
        ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT LP+    N
Subjt:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN

P0CT35 Transposon Tf2-2 polyprotein

9.5e-36

29.16

Show/hide

Query:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN
        ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL   D +K   +ETDASD A+G+VL Q   DD  +P+ Y +
Subjt:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN

Query:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------
         K++ A+  Y+ S+KEMLA++  L+ WR YL  +   F I TD+ ++           + + ARWQ                                  
Subjt:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------

Query:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA
         + SE  ++    Q+   S++   +  + T   NDT    L+  +E+ +  E                       L R ++K+ H+     H G +    
Subjt:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA

Query:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN
        ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT LP+    N
Subjt:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN

P0CT36 Transposon Tf2-3 polyprotein

9.5e-36

29.16

Show/hide

Query:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN
        ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL   D +K   +ETDASD A+G+VL Q   DD  +P+ Y +
Subjt:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN

Query:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------
         K++ A+  Y+ S+KEMLA++  L+ WR YL  +   F I TD+ ++           + + ARWQ                                  
Subjt:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------

Query:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA
         + SE  ++    Q+   S++   +  + T   NDT    L+  +E+ +  E                       L R ++K+ H+     H G +    
Subjt:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA

Query:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN
        ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT LP+    N
Subjt:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN

P0CT41 Transposon Tf2-12 polyprotein

9.5e-36

29.16

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Query:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN
        ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL   D +K   +ETDASD A+G+VL Q   DD  +P+ Y +
Subjt:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN

Query:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------
         K++ A+  Y+ S+KEMLA++  L+ WR YL  +   F I TD+ ++           + + ARWQ                                  
Subjt:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------

Query:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA
         + SE  ++    Q+   S++   +  + T   NDT    L+  +E+ +  E                       L R ++K+ H+     H G +    
Subjt:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA

Query:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN
        ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT LP+    N
Subjt:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN

Q9UR07 Transposon Tf2-11 polyprotein

9.5e-36

29.16

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Query:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN
        ++LR FLG  NY R+F+   S+ T PL  LLKKD +W W      A E++K+  +  PVL   D +K   +ETDASD A+G+VL Q   DD  +P+ Y +
Subjt:  EKLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQ---DD--HPIAYEN

Query:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------
         K++ A+  Y+ S+KEMLA++  L+ WR YL  +   F I TD+ ++           + + ARWQ                                  
Subjt:  RKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGS--KFVIKTDNSSICHFFAQRK--LSSKQARWQ----------------------------------

Query:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA
         + SE  ++    Q+   S++   +  + T   NDT    L+  +E+ +  E                       L R ++K+ H+     H G +    
Subjt:  DRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRE-----------------------LRRLLMKECHDTPWAGHNGWQRTYA

Query:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN
        ++ + + W  +R  I  + + C  CQ +KS + K  G L+P+    RPW+S+SMDFIT LP+    N
Subjt:  LLKQGYCWPSLRDDIMPFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSN

Arabidopsis top hits

e value

%identity

Alignment

AT1G45063.1 copper ion binding;electron carriers

9.9e-04

32.84

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Query:  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRMLFDEHPFKASK
        W    PS C LC    ++++H+FF+C F+ ++W+  F      V PP  F    R L   HP +  K
Subjt:  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRMLFDEHPFKASK

AT1G60720.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

6.8e-05

27.17

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Query:  QKQCPWSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLG-FIGWIRMLFDEHPFKASKQFLWEKLRSFLGLANYYRR
        Q+   W  I    CCLC  +++S+ H+ F+C+FA  +W   FS     + P    F  W  +L       +S   L  K+ +   + N +R+
Subjt:  QKQCPWSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLG-FIGWIRMLFDEHPFKASKQFLWEKLRSFLGLANYYRR

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

4.0e-05

38.6

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Query:  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRML
        W  I P  C  C    ++++H+FF+C+FA ++W    S    HV PPL F   IR L
Subjt:  WSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRML

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.3e-08

44.12

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Query:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPF
        +LR FLGL  YYRRFV+ + +   PLT+LLKK +   W      AF+ LK      PVL + D+  PF
Subjt:  KLRSFLGLANYYRRFVEGFSRKTGPLTKLLKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPF

Sequences

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CDS sequence

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ATGGATAAACTTCAGAAACAGTGTCCATGGTCCCCTATTTCTCCCTCGTGGTGCTGTCTTTGCAGAGAAGATAGTGATTCACAAAAGCATATTTTCTTCAATTGTCAGTT
TGCTGTTGATATCTGGGCTGCTCTGTTTTCTGCTTTTGGTTGGCATGTTGCCCCTCCTTTAGGCTTCATTGGTTGGATCAGAATGCTGTTCGATGAGCACCCCTTCAAGG
CATCTAAACAATTTCTATGGGAGAAACTGCGCTCCTTCCTCGGACTAGCCAACTACTATAGGCGGTTCGTGGAGGGATTCTCGAGGAAAACAGGACCGTTGACTAAGTTG
TTGAAGAAAGATCACCAGTGGGGTTGGATCTCAGAGTGTCAAGCTGCCTTCGAAGACTTGAAGAAGGTCACGATGGAGGGGCCAGTTCTCGGAATTGCAGATGTAACAAA
GCCTTTCGAAGTCGAAACTGATGCGTCCGACTTCGCCTTAGGCAGCGTTCTCCTTCAAGACGACCATCCCATTGCTTATGAGAATCGAAAACTAAACGATGCTGAAAGGA
GATATGCAACATCTGAGAAAGAAATGTTGGCCGTTGTTCACTGTTTACGAGCCTGGAGACAATATCTGTTAGGCTCCAAGTTCGTAATCAAGACTGACAACAGCTCGATC
TGCCACTTTTTCGCACAGCGAAAGTTGTCGTCCAAGCAAGCCCGATGGCAAGACCGGAAAAGCGAACATGCAGCCCTGTGCTTGTTCGCCCAGTTAAAAGCCAGTAGTCT
GAGTGGGACAGTCCGAGAAGCCATAAGAACCCACTTGGTCAACGACACAGCTGCCCAAGCCTTGATTCAACTGTCCGAAGAGGGGAAGACTCGGGAGCTTCGAAGATTGT
TAATGAAAGAGTGTCACGATACGCCATGGGCTGGACACAATGGGTGGCAAAGAACCTATGCGCTGTTGAAACAAGGCTACTGTTGGCCAAGTCTCCGGGATGATATCATG
CCGTTCACTAAGACTTGTCTTGTTTGCCAACAAGACAAATCGGAAAGCGCAAAGTTAGCTGGTCTACTGGAACCCTTACTTGTACCCTCAAGACCATGGGATAGTGTGTC
TATGGATTTCATCACACATCTACCTAAAGTTGGGAGTTCAAATCGATACCAGTGA

mRNA sequence

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Protein sequence

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MDKLQKQCPWSPISPSWCCLCREDSDSQKHIFFNCQFAVDIWAALFSAFGWHVAPPLGFIGWIRMLFDEHPFKASKQFLWEKLRSFLGLANYYRRFVEGFSRKTGPLTKL
LKKDHQWGWISECQAAFEDLKKVTMEGPVLGIADVTKPFEVETDASDFALGSVLLQDDHPIAYENRKLNDAERRYATSEKEMLAVVHCLRAWRQYLLGSKFVIKTDNSSI
CHFFAQRKLSSKQARWQDRKSEHAALCLFAQLKASSLSGTVREAIRTHLVNDTAAQALIQLSEEGKTRELRRLLMKECHDTPWAGHNGWQRTYALLKQGYCWPSLRDDIM
PFTKTCLVCQQDKSESAKLAGLLEPLLVPSRPWDSVSMDFITHLPKVGSSNRYQ

Clc04G00160 (gene) of Watermelon (cordophanus) v2 genome