CuGenDBv2

Gene ID	Clc04G00270
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Ribulose bisphosphate carboxylase large chain
Genome location	ClcChr04:1019785..1020759
RNA-Seq Expression	Clc04G00270
Synteny	Clc04G00270
Gene Ontology terms	GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0009536 - plastid (cellular component) GO:0016491 - oxidoreductase activity (molecular function) GO:0016984 - ribulose-bisphosphate carboxylase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR017443 - Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal IPR033966 - RuBisCO IPR036422 - RuBisCO large subunit, N-terminal domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AAA33017.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Batis maritima]

2.0e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

AAA84090.1 ribulose 1,5-bisphosphate carboxylase [Batis maritima]

2.0e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

AIV43089.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Dimorphotheca pluvialis]

2.6e-24

61.17

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

ANO44961.1 ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Uvularia grandiflora]

2.6e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

YP_009864756.1 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Uvularia grandiflora]

2.6e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0QLT3 Ribulose bisphosphate carboxylase large chain (Fragment)

1.3e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

A0A0D3M3A5 Ribulose bisphosphate carboxylase large chain (Fragment)

1.3e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

A0A0R7JP27 Ribulose bisphosphate carboxylase large chain (Fragment)

1.3e-24

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

Q31899 Ribulose bisphosphate carboxylase large chain

9.7e-25

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

Q39288 Ribulose bisphosphate carboxylase large chain

9.7e-25

59.46

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

SwissProt top hits

e value

%identity

Alignment

O62943 Ribulose bisphosphate carboxylase large chain

2.2e-26

60.19

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

P27064 Ribulose bisphosphate carboxylase large chain

2.2e-26

60.19

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

P28381 Ribulose bisphosphate carboxylase large chain

5.9e-27

61.17

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ VLGEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

P31202 Ribulose bisphosphate carboxylase large chain (Fragment)

2.9e-26

57.66

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYG++ V GEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDLH--PLLSK
         DL   P  SK
Subjt:  IDLH--PLLSK

P36478 Ribulose bisphosphate carboxylase large chain (Fragment)

3.8e-26

60.19

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Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCYGI+ V GEENQYIAY  +   +  E S+T   T  + ++ G + L+A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00490.1 ribulose-bisphosphate carboxylases

5.6e-25

57.28

Show/hide

Query:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ
        +   FRVTPQ  VPP+E GA VAAESSTGTWTTVWTDGLTSLDRYKGRCY I+ V GEE Q+IAY  +   +  E S+T   T  + ++ G + L A   
Subjt:  LFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRI--EPSITTTSTHPIWSLNGGRPLQASTQ

Query:  IDL
         DL
Subjt:  IDL

Sequences

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CDS sequence

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ATGTTTATCATTATTTTATTTCGTACATTCCGAGTAACTCCTCAACTGAGAGTTCCACCTAAAGAAGTAGGGGCCACTGTAGCTGCTGAATCTTCTACTGGTACA
TGGACAACTGTATGGACCGATGGGCTTACCAGTCTTGATCGTTACAAAGGACGATGCTATGGAATCCAGCTTGTTCTTGGAGAAGAAAATCAATATATTGCTTAT
TGTCGTTTCAGATTCAGGATCGAGCCAAGTATCACAACTACTTCTACCCATCCTATTTGGAGTTTAAACGGTGGACGGCCATTGCAGGCCTCTACACAAATCGAT
CTTCACCCCTTACTGAGCAAAGCTCGAATCACGAAGATGGCCGCTAGAGTTTATGGTCAGTAG

mRNA sequence

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Protein sequence

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MFIIILFRTFRVTPQLRVPPKEVGATVAAESSTGTWTTVWTDGLTSLDRYKGRCYGIQLVLGEENQYIAYCRFRFRIEPSITTTSTHPIWSLNGGRPLQASTQID
LHPLLSKARITKMAARVYGQ

Clc04G00270 (gene) of Watermelon (cordophanus) v2 genome