CuGenDBv2

Gene ID	Clc04G00315
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	30S ribosomal protein S2, chloroplastic
Genome location	ClcChr04:1104711..1105093
RNA-Seq Expression	Clc04G00315
Synteny	Clc04G00315
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0006412 - translation (biological process) GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0045261 - proton-transporting ATP synthase complex, catalytic core F(1) (cellular component) GO:0005743 - mitochondrial inner membrane (cellular component) GO:0009507 - chloroplast (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0032549 - ribonucleoside binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR023591 - Ribosomal protein S2, flavodoxin-like domain superfamily IPR018130 - Ribosomal protein S2, conserved site

Homology

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GenBank top hits

e value

%identity

Alignment

QIB72005.1 30S ribosomal protein S2 [Magnolia delavayi]

4.2e-15

53.93

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Query:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

QJF46372.1 ribosomal protein S2 [Cucumis melo]

3.2e-15

75.93

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Query:  WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        +  +  S+  R+KSEEV GEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMA Y
Subjt:  WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

QRN71379.1 ribosomal protein S2 [Semiaquilegia guangxiensis]

2.9e-16

63.01

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Query:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFGHGT+KWNPRMA Y
Subjt:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

WP_222196268.1 30S ribosomal protein S2, partial [Modestobacter italicus]

2.4e-15

60.26

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Query:  MAWIVYQQSIPSR----------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MAWIVYQ+ I  R                      +K EEV GEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  MAWIVYQQSIPSR----------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

YP_009744483.1 ribosomal protein S2 [Aquilegia rockii]

2.9e-16

63.01

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Query:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFGHGT+KWNPRMA Y
Subjt:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

TrEMBL top hits

e value

%identity

Alignment

A0A411FR86 30S ribosomal protein S2, chloroplastic

7.7e-15

90.7

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Query:  EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        EK EEV GEMTRRYWNIH EEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

A0A6C0UCN5 30S ribosomal protein S2, chloroplastic

2.0e-15

53.93

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Query:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

A0A6G6DA64 30S ribosomal protein S2, chloroplastic

1.4e-16

63.01

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Query:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        +  MAW VY  SI  R+              K EEV GEMTRRYWNIHLEEMMEAGVHFGHGT+KWNPRMA Y
Subjt:  RRAMAWIVYQQSIPSRE--------------KSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

A0A6M3W1W6 30S ribosomal protein S2, chloroplastic

1.5e-15

75.93

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Query:  WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        +  +  S+  R+KSEEV GEMTRRYWNIHL EMMEAGVHFGHGTRKWNPRMA Y
Subjt:  WIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

A0A7M3UYB2 30S ribosomal protein S2, chloroplastic

2.0e-15

53.93

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Query:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        AF +V+         M W VYQ+SI  R                  +K E+V GEMTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  AFSVVLSHSSPPRRAMAWIVYQQSIPSR------------------EKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

SwissProt top hits

e value

%identity

Alignment

A6MM25 30S ribosomal protein S2, chloroplastic

1.8e-13

94.12

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

A8SE74 30S ribosomal protein S2, chloroplastic

1.8e-13

94.12

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MTRRYWNI+LEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

Q09MI9 30S ribosomal protein S2, chloroplastic

1.4e-13

91.18

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        M RRYWNIHLEEMMEAG+HFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

Q0G9N0 30S ribosomal protein S2, chloroplastic

2.8e-14

97.06

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

Q4VZP4 30S ribosomal protein S2, chloroplastic

2.8e-14

97.06

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

Arabidopsis top hits

e value

%identity

Alignment

ATCG00160.1 ribosomal protein S2

1.9e-13

88.24

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Query:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY
        MT+RYWNI LEEMM AGVHFGHGTRKWNPRMA Y
Subjt:  MTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACY

Sequences

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CDS sequence

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ATGTTACACGAAAGCGCCGCTTTCTCTGTAGTGTTGTCACACAGCAGCCCGCCTAGAAGAGCCATGGCTTGGATCGTGTATCAACAGTCAATCCCCAGTCGAGAAAAAAG
CGAGGAAGTGAGGGGAGAAATGACAAGAAGATATTGGAACATCCATTTGGAAGAGATGATGGAAGCAGGAGTTCATTTTGGTCATGGTACTAGGAAATGGAATCCTAGAA
TGGCGTGCTATCCTCCAGTCTTCTTAATCTTTGTTCTCGGACCGAATGTGATAGAATTTGCCGCTATTGAATCAGCAACTTTTGAATCAAAGCAATAG

mRNA sequence

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Protein sequence

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MLHESAAFSVVLSHSSPPRRAMAWIVYQQSIPSREKSEEVRGEMTRRYWNIHLEEMMEAGVHFGHGTRKWNPRMACYPPVFLIFVLGPNVIEFAAIESATFESKQ

Clc04G00315 (gene) of Watermelon (cordophanus) v2 genome