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Clc04G00350 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00350
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionBeta-galactosidase
Genome locationClcChr04:1158074..1158406
RNA-Seq ExpressionClc04G00350
SyntenyClc04G00350
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005773 - vacuole (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
InterPro domainsIPR001944 - Glycoside hydrolase, family 35
IPR017853 - Glycoside hydrolase superfamily
IPR031330 - Glycoside hydrolase 35, catalytic domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060182.1 beta-galactosidase-like [Cucumis melo var. makuwa]4.2e-5089.72Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

KAE8653552.1 hypothetical protein Csa_007631 [Cucumis sativus]2.7e-4989.72Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF   W VL  +A LA FSFC GDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQR+KYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

TYK04229.1 beta-galactosidase-like [Cucumis melo var. makuwa]1.2e-4988.79Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTD MWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

XP_008444022.1 PREDICTED: beta-galactosidase-like [Cucumis melo]1.2e-4988.79Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTD MWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

XP_038896535.1 beta-galactosidase 15-like [Benincasa hispida]6.7e-4886.92Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        M   QWLVLPLV  L+ FSFC G +VSYDSNAIIINGERRVIFSGSIHYPRST+AMWP+LIQKAKDG LDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQ+AG
Subjt:  QLVQDAG

TrEMBL top hitse value%identityAlignment
A0A1S3BA81 Beta-galactosidase5.9e-5088.79Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTD MWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

A0A5A7UWH0 Beta-galactosidase2.0e-5089.72Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

A0A5A7V9Y9 Beta-galactosidase1.2e-4786.92Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MFKLQW    LVA LA  +FC GDNVSYDSNAIIINGERR+IFSGSIHYPRST+AMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSG L+FIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QL+QDAG
Subjt:  QLVQDAG

A0A5D3C1I9 Beta-galactosidase5.9e-5088.79Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MF  QW VL +VA LA FSFC GDN+SYDSNAIIINGERR+IFSGSIHYPRSTD MWPDLIQKAKDGGLDAIETYIFWDRHEP+RRKYDFSGHLNFIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QLVQDAG
Subjt:  QLVQDAG

A0A5D3DUP4 Beta-galactosidase1.2e-4786.92Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        MFKLQW    LVA LA  +FC GDNVSYDSNAIIINGERR+IFSGSIHYPRST+AMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSG L+FIKFF
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        QL+QDAG
Subjt:  QLVQDAG

SwissProt top hitse value%identityAlignment
P49676 Beta-galactosidase1.0e-3059.38Show/hide
Query:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS
        + SF       VS+D  AI I+G+RR++ SGSIHYPRST  MWPDLI KAKDGGLD IETY+FW+ HEP RR+YDFSG+L+ ++F + +Q AG  S
Subjt:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS

Q67VU7 Putative beta-galactosidase 101.3e-3057.43Show/hide
Query:  LVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDA
        LV  LV  LA  +   G  V+Y+  +++I+GERR+I SGSIHYPRST  MWPDLI+KAK+GGLDAIETY+FW+ HEP RR+Y+F G+ + ++FF+ +Q+A
Subjt:  LVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDA

Query:  G
        G
Subjt:  G

Q7G3T8 Beta-galactosidase 136.5e-3057.43Show/hide
Query:  LVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDA
        LV  LV  LA  +      V+Y+  +++I+GERR+I SGSIHYPRST  MWPDLI+KAK+GGLDAIETY+FW+ HEP RR+Y+F G+ + I+FF+ +Q+A
Subjt:  LVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDA

Query:  G
        G
Subjt:  G

Q8RUV9 Beta-galactosidase 13.5e-3157.84Show/hide
Query:  WLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQD
        W+ L ++A  A    CT  +VSYD  +++I+G+RR+I SGSIHYPRST  MWPDLI+KAK+GGLDAIETYIFW+ HEP RR+Y+F G+ + ++FF+ +Q+
Subjt:  WLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQD

Query:  AG
        AG
Subjt:  AG

Q9SCV5 Beta-galactosidase 75.3e-3262.5Show/hide
Query:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS
        + S S      VS+D  AI ING+RR++ SGSIHYPRST  MWPDLI KAKDGGLDAIETY+FW+ HEP+RR+YDFSG+L+ ++F + +QDAG  S
Subjt:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS

Arabidopsis top hitse value%identityAlignment
AT1G31740.1 beta-galactosidase 152.5e-2964.63Show/hide
Query:  VSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAG
        VS+D  AI I+G RRV+ SGSIHYPRST  MWPDLI+K K+G LDAIETY+FW+ HEP RR+YDFSG+L+ I+F + +Q+ G
Subjt:  VSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAG

AT2G28470.1 beta-galactosidase 88.7e-3051.4Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        M K++ + + L+  L      T  NV+YD  A++I+G+R+V+ SGSIHYPRST  MWP+LIQK+KDGGLD IETY+FW  HEP++ KY+F G  + +KF 
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        +L   AG
Subjt:  QLVQDAG

AT2G28470.2 beta-galactosidase 88.7e-3051.4Show/hide
Query:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF
        M K++ + + L+  L      T  NV+YD  A++I+G+R+V+ SGSIHYPRST  MWP+LIQK+KDGGLD IETY+FW  HEP++ KY+F G  + +KF 
Subjt:  MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFF

Query:  QLVQDAG
        +L   AG
Subjt:  QLVQDAG

AT3G13750.1 beta galactosidase 11.5e-2959.57Show/hide
Query:  LASFSFCT-GDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAG
        L  F  C+   +VSYDS AI ING+RR++ SGSIHYPRST  MWPDLI+KAK+GGLD I+TY+FW+ HEP   KY F G+ + +KF +LVQ +G
Subjt:  LASFSFCT-GDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAG

AT5G20710.1 beta-galactosidase 73.8e-3362.5Show/hide
Query:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS
        + S S      VS+D  AI ING+RR++ SGSIHYPRST  MWPDLI KAKDGGLDAIETY+FW+ HEP+RR+YDFSG+L+ ++F + +QDAG  S
Subjt:  LASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAAACTTCAATGGCTTGTTCTTCCCCTCGTTGCAGCTTTAGCTTCCTTTTCCTTTTGTACAGGAGACAATGTCTCCTACGATTCAAATGCCATAATTATCAATGG
TGAACGACGCGTTATCTTCTCAGGTTCAATTCATTATCCACGCAGCACCGATGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGTGGACTGGATGCAATCGAGA
CATATATTTTTTGGGATCGCCACGAACCTCAACGACGAAAATACGATTTCTCTGGACATCTAAATTTTATCAAATTCTTCCAGCTCGTTCAAGATGCCGGCTATATGTCG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTAAACTTCAATGGCTTGTTCTTCCCCTCGTTGCAGCTTTAGCTTCCTTTTCCTTTTGTACAGGAGACAATGTCTCCTACGATTCAAATGCCATAATTATCAATGG
TGAACGACGCGTTATCTTCTCAGGTTCAATTCATTATCCACGCAGCACCGATGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGTGGACTGGATGCAATCGAGA
CATATATTTTTTGGGATCGCCACGAACCTCAACGACGAAAATACGATTTCTCTGGACATCTAAATTTTATCAAATTCTTCCAGCTCGTTCAAGATGCCGGCTATATGTCG
TGA
Protein sequenceShow/hide protein sequence
MFKLQWLVLPLVAALASFSFCTGDNVSYDSNAIIINGERRVIFSGSIHYPRSTDAMWPDLIQKAKDGGLDAIETYIFWDRHEPQRRKYDFSGHLNFIKFFQLVQDAGYMS