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Clc04G00520 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00520
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich cell wall structural protein 1.0-like
Genome locationClcChr04:1709959..1711554
RNA-Seq ExpressionClc04G00520
SyntenyClc04G00520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008465297.1 PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo]2.6e-0873.24Show/hide
Query:  GGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
        GGG  GGG G   G   G GGG+ G GG GGG GTMVAPG+GGAVHISR+ FESNSRGYFQD+RAAEKGGK
Subjt:  GGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
XP_038900902.1 uncharacterized protein LOC120087950 [Benincasa hispida]8.4e-0777.27Show/hide
Query:  GKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
        G   G GTMVAPGSGGA HISREGFESN+RGYFQD  A++KGGK
Subjt:  GKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
TrEMBL top hitse value%identityAlignment
A0A1S3CQ14 glycine-rich cell wall structural protein 1.0-like1.3e-0873.24Show/hide
Query:  GGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
        GGG  GGG G   G   G GGG+ G GG GGG GTMVAPG+GGAVHISR+ FESNSRGYFQD+RAAEKGGK
Subjt:  GGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
A0A6J1DFA1 LOW QUALITY PROTEIN: keratin, type II cytoskeletal 1-like7.2e-0463.64Show/hide
Query:  MPGGGSRGGGGGGRDGKSSGGGGGNGGSGGK--GGGG--GTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
        M GGG  GGGGGG  G   GGGGG GG GG   GGGG  G MVAPGSGG+ +ISR GFESN  GYF +   AEK GK
Subjt:  MPGGGSRGGGGGGRDGKSSGGGGGNGGSGGK--GGGG--GTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGGCGGTGGTAGTAGAGGTGGAGGAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCGGAGGCGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAAC
GATGGTTGCTCCGGGAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGAGCAATTCAAGAGGTTACTTTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGT
AG
mRNA sequenceShow/hide mRNA sequence
CATTTCATCCTTCTCTATTTATTTATTTTTTCACAAAGGATCGTTTGCGCCTCTGACATTCTCCCCTCTGAAAAAGCTTCTTTGAATTTCTAACTGATGCCCGGCGGTGG
TAGTAGAGGTGGAGGAGGTGGTGGCAGAGATGGCAAAAGTAGTGGCGGAGGCGGTGGGAACGGTGGAAGTGGCGGCAAAGGAGGTGGTGGTGGAACGATGGTTGCTCCGG
GAAGTGGAGGAGCCGTTCATATCTCACGAGAAGGATTTGAGAGCAATTCAAGAGGTTACTTTCAAGATTATCGTGCAGCAGAGAAGGGCGGGAAGTAGTTAATTAAATAT
TAATTATGTCAAATTCCTATTATAATAAATAAAAATGTCCTTTTAATTATCTTTGTTTTTGCCTTCTATAACATCTATTATTGCTAATCTGTGGACTTTGGACTGTTTTT
GTGTATTTAGTATGCAACATAGACTAAATTTTTAAATTTGAAAGTTTAGGATTAAATGACAAAATCTCAAAATTTAGAAACAAAATTTGTTGCTGTTGATGCAATGACTT
AATTAAGTTCGATCAATATCACTTTGATTCCAAACTTAGTCTTAGCTTTCCTATACACTTGACGTATGTGCTTGCGTTGCATCACGCGTTAGAACTCCATTGGAGCATTT
GTTT
Protein sequenceShow/hide protein sequence
MPGGGSRGGGGGGRDGKSSGGGGGNGGSGGKGGGGGTMVAPGSGGAVHISREGFESNSRGYFQDYRAAEKGGK