CuGenDBv2

Gene ID	Clc04G00540
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Genome location	ClcChr04:1736600..1737491
RNA-Seq Expression	Clc04G00540
Synteny	Clc04G00540
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022151653.1 uncharacterized protein LOC111019565 [Momordica charantia]

1.1e-59

93.33

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSP PFT ASNMLRHRLLP+LRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPG+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME +GIS SGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

XP_022925065.1 uncharacterized protein LOC111432424 [Cucurbita moschata]

3.1e-59

93.33

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME L +SGSGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

XP_022966491.1 uncharacterized protein LOC111466129 [Cucurbita maxima]

1.8e-59

94.17

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME L ISGSGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

XP_023517134.1 uncharacterized protein LOC111780983 [Cucurbita pepo subsp. pepo]

7.0e-59

93.33

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEERPKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME L +S SGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

XP_038881129.1 uncharacterized protein LOC120072731 [Benincasa hispida]

1.8e-62

97.5

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHE+RPKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEMEKLG+SGSGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

TrEMBL top hits

e value

%identity

Alignment

A0A067KZT1 Uncharacterized protein

8.7e-55

88.98

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSP PFT AS MLR RL  SLRTRGG AAG SRWTSPGHEERPKGYLFNRTPPP G+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSE
        LERLEMEKLG+SGSG SE
Subjt:  LERLEMEKLGISGSGSSE

A0A6J1DCT8 uncharacterized protein LOC111019565

5.2e-60

93.33

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSP PFT ASNMLRHRLLP+LRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPG+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME +GIS SGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

A0A6J1EGU8 uncharacterized protein LOC111432424

1.5e-59

93.33

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME L +SGSGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

A0A6J1HPH2 uncharacterized protein LOC111466129

8.9e-60

94.17

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPSPTPF  ASNMLRHRLLPSLRTRGGAA GQSRWTSPGHEE+PKGYLFNRTPPPPG+SRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSESD
        LERLEME L ISGSGSSESD
Subjt:  LERLEMEKLGISGSGSSESD

I3NMS3 Uncharacterized protein

1.5e-54

88.98

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPS  PFT AS+MLR RL  SLRTRGGAAAG SRWTSPGHEERPKGYLFNRTPPPPG+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGSSE
        LERLEMEKLG SGSG SE
Subjt:  LERLEMEKLGISGSGSSE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G42310.1 unknown protein

1.5e-43

70.69

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        MPS    T A+  LR+R+       G  +AG SRW +PGHEERPKGY  NRTPP PG+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGS
        LERLEMEKL  +G  S
Subjt:  LERLEMEKLGISGSGS

AT3G57785.1 unknown protein

7.5e-43

70.69

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Query:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA
        M S  P   A+  LR+R+    R+ G  + G SRW +PGHEERPKGY  NRTPPPPG+SRKWEDWELPCY+TSFLTIVILGVGLNAKPDL+IETWAHQKA
Subjt:  MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKA

Query:  LERLEMEKLGISGSGS
        LERLEMEKL  +G  S
Subjt:  LERLEMEKLGISGSGS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCCTCGCCGACGCCCTTTACAAACGCCTCGAATATGCTCCGGCACCGCCTTCTCCCTTCTCTCCGCACCCGCGGTGGAGCCGCCGCCGGACAGAGCCGGTGGACCAG
TCCCGGTCACGAGGAGCGCCCCAAAGGGTATCTTTTCAATCGGACGCCACCTCCACCAGGTGAGTCCCGTAAATGGGAGGATTGGGAGCTTCCATGTTATGTTACTAGTT
TTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTTGAGATGGAGAAGCTGGGT
ATCTCTGGCTCTGGATCATCTGAATCTGATTGA

mRNA sequence

Show/hide mRNA sequence

AAAAAAATTCCCATACGTAAATCGAGCTTCTGAAAACGACGACGCTTCATGTTGTCCAGAGACCAAAAGGTCTCGTCTAAGTATCACACGCGACTGAGTAATCCCTCTCT
TTCTCTCTTCCTTCTTTCGCTCTCGCTGGATCCCTCGCCGAGTCGCTGAAATCGAAAGATCAATTCAAAATGCCCTCGCCGACGCCCTTTACAAACGCCTCGAATATGCT
CCGGCACCGCCTTCTCCCTTCTCTCCGCACCCGCGGTGGAGCCGCCGCCGGACAGAGCCGGTGGACCAGTCCCGGTCACGAGGAGCGCCCCAAAGGGTATCTTTTCAATC
GGACGCCACCTCCACCAGGTGAGTCCCGTAAATGGGAGGATTGGGAGCTTCCATGTTATGTTACTAGTTTTCTTACTATCGTGATTCTTGGCGTTGGCCTCAACGCCAAG
CCTGATCTCACAATTGAGACTTGGGCTCACCAGAAGGCCCTCGAGCGCCTTGAGATGGAGAAGCTGGGTATCTCTGGCTCTGGATCATCTGAATCTGATTGAATTTCGTG
GTCCTTGTGCACTTTCGGGAACTGGGTTGTCTGATTTTTATTCCTCCCGTTGGAAAGGGGTTTCGGATATATGGTGGGTTTCATGAGATGGTGTCGATATCCTGTAGTTC
AATAAGTTTTCCTACATGTTTTTGCTGACTCTTTTGGAGCTTCAATAACTGCTTCATTTTTAACTGTTAGCTTTGGACATCTTTGACGTCGTAAATGTCAAGTATTTGAG
AATTTTAACTTTCTGCTGTGTTTCAATTCAGATTCCAATGTGAATTATATATACGGATTCTCTAATAATTTAGGTCCGCTGGATGTCTTATGATATTGATTTTAGTGGCA
ACTTTTTTTTTT

Protein sequence

Show/hide protein sequence

MPSPTPFTNASNMLRHRLLPSLRTRGGAAAGQSRWTSPGHEERPKGYLFNRTPPPPGESRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG
ISGSGSSESD

Clc04G00540 (gene) of Watermelon (cordophanus) v2 genome