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Clc04G00550 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00550
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L22, chloroplastic
Genome locationClcChr04:1764345..1770829
RNA-Seq ExpressionClc04G00550
SyntenyClc04G00550
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001063 - Ribosomal protein L22/L17
IPR005727 - Ribosomal protein L22, bacterial/chloroplast-type
IPR036394 - Ribosomal protein L22/L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88767.1 ribosomal protein L22, partial [Lagenaria siceraria]7.5e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
AHM88940.1 ribosomal protein L22, partial [Lagenaria siceraria]7.5e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
YP_009751777.1 ribosomal protein L22 [Herpetospermum pedunculosum]7.5e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
YP_009752282.1 ribosomal protein L22 [Trichosanthes baviensis]7.5e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
YP_009752705.1 ribosomal protein L22 [Ampelosycios humblotii]5.8e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS+N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
TrEMBL top hitse value%identityAlignment
A0A1P8LE31 50S ribosomal protein L22, chloroplastic3.6e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
A0A1X9Q191 50S ribosomal protein L22, chloroplastic3.6e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
A0A218KG85 50S ribosomal protein L22, chloroplastic3.6e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
A0A6H0EUY8 50S ribosomal protein L22, chloroplastic2.8e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS+N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
A0A6M3S403 50S ribosomal protein L22, chloroplastic3.6e-1794.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
SwissProt top hitse value%identityAlignment
A4GYV0 50S ribosomal protein L22, chloroplastic3.2e-1883.93Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNVEIGLN
        MS HKARR+IDQI GRSYEET+MILELMPYRACYPI KLVYSAAANAS N  +GLN
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNVEIGLN
B1A974 50S ribosomal protein L22, chloroplastic5.4e-1888.24Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MS HKARRVIDQI GRSYEET+MILELMPYRACYPI KLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
B1NWI9 50S ribosomal protein L22, chloroplastic1.1e-1886.27Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARR+IDQI GRSYEET+MILELMPYRACYPI KL+YSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
Q14FB8 50S ribosomal protein L22, chloroplastic3.2e-1883.93Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNVEIGLN
        MS HKARR+IDQI GRSYEET+MILELMPYRACYPI KLVYSAAANAS N  +GLN
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNVEIGLN
Q4VZM9 50S ribosomal protein L22, chloroplastic9.9e-2094.12Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
        MSPHKARRVIDQI GRSYEETMMILELMPYRACYPILKLVYSAAANAS N+
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNV
Arabidopsis top hitse value%identityAlignment
ATCG00810.1 ribosomal protein L225.6e-1886Show/hide
Query:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRN
        MS HKARRVIDQI GRSYEE +MILELMPYR CYPI KLVYSAAANAS N
Subjt:  MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRN

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCATGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTT
AAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCGCAATGTTGAAATAGGGTTGAATTGGCTGGAAAAAGGCCAAACCGGACCACCTGAACCGTTCAGGAAACTGTCAG
GAACTTTCCCTGAAAAAGTCAAACTTCACGTGAAAAGTCAACCTAACGGGAAGTCAAACTTACTGAAAAAAGTCAAACTTTTCAGAATGCGTGGAACTTACCAAGAAAAA
GTTGACGAAACTTACCGGGAAGAATTTGACGAAACTTTACGAAAAAGGTCAACGGAACTTACCAGGAAGTCAAACTTACTAGGAAAGTCAAACTTTCAGGCGTTGAACTT
GAGGAACTTACTAGGAAGTGTTAAACTGGCGGAACTTACCAAGAAAAGTCAACTGACCTGGAAAGTCAAACTTTCAGATGCTGAACCGGCGGAACTTACTCAAAAAGGTC
AACTGATTGGGAAAGTCACATTTTTAGGCGCTGAATCGGCGGAAATTACCGGGAACGAACCGGCAAAACTTACTGGGAAACAAAGGCGTGAGCCTTACCGGGAAGCTGAA
TCGCCAAATCTAATCGAAAAACATGATCGAAACTTACCCGAAAATCAAACCGCTAGAACTTACCGAGAAGCTGAACCGCGCGCAGTTGATTTTGCTTCACACAGCATCAA
TGTTGTGGTGCCATCCAGTAGCGCGACACCGTTGCCTTTCCATATCGTTCCCGACGTGAAGACTGAAGGACATCTTGGCGGTTCCTCCTCAATCAAGGGCTTCTTCCTAA
CTTCACTGTCTTATGAGCCCTTGCAACTAAATGAGAATCTGAGTTATCAGGAGAAACCCATTCAAATATTGGAAAGAGAAGTAAAGACCTTGCGCAAGAGAGAAATACCG
CTGGTAAAGGTTAGAACTTTCGAGGACGAAAGTTTCCTAAGGAGGGAAGAATGTGACGACCCAATTTTTGAGCAAGAAGAAAGTATCTCTATCCGGGTGTGTTTTGGTGG
GTGTTCTCTTTCATTTCTGGTTGTTAGGGGGCGATCTCGTGCCTTGAGTATCGCTCCAGGTATTACTCGAATTTCGACTAGTGAATCTCGCGAGTCGTTTGATAGTTTTG
CTCGGTATCGTAGGTTCGCTCAAACTAATGGATCTCGCTCACCAATTGCAGGCTTCCCTTGTGTTTTGAGTGTTGCTGGTCGCCAGTTGTGCAAGTCTCGCTCAATCCAA
TTGTCTCATAGGTGGTGGTTGCTGCAGAAGTTCTTGGTTATTGTAAGGTGCGATGATTGCCCTTTTAGTGCTACTATGTTATCGGAGACCGACGAGTTTCCTGTTATGTT
ATCAGAGACTAACGGATTTTCTACTATGTTATCGGACATCGACGGGTACCATGCTACGTTTGTGAGCCTTCGGGCCACTAGTTGTGTACTAGGATGGGCTAAATCACTTA
CCAAATGGCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCCTCACAAAGCGCGAAGAGTAATTGATCAGATTCATGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCGAGCATGTTATCCAATTTT
AAAATTGGTTTATTCGGCAGCAGCAAATGCTAGTCGCAATGTTGAAATAGGGTTGAATTGGCTGGAAAAAGGCCAAACCGGACCACCTGAACCGTTCAGGAAACTGTCAG
GAACTTTCCCTGAAAAAGTCAAACTTCACGTGAAAAGTCAACCTAACGGGAAGTCAAACTTACTGAAAAAAGTCAAACTTTTCAGAATGCGTGGAACTTACCAAGAAAAA
GTTGACGAAACTTACCGGGAAGAATTTGACGAAACTTTACGAAAAAGGTCAACGGAACTTACCAGGAAGTCAAACTTACTAGGAAAGTCAAACTTTCAGGCGTTGAACTT
GAGGAACTTACTAGGAAGTGTTAAACTGGCGGAACTTACCAAGAAAAGTCAACTGACCTGGAAAGTCAAACTTTCAGATGCTGAACCGGCGGAACTTACTCAAAAAGGTC
AACTGATTGGGAAAGTCACATTTTTAGGCGCTGAATCGGCGGAAATTACCGGGAACGAACCGGCAAAACTTACTGGGAAACAAAGGCGTGAGCCTTACCGGGAAGCTGAA
TCGCCAAATCTAATCGAAAAACATGATCGAAACTTACCCGAAAATCAAACCGCTAGAACTTACCGAGAAGCTGAACCGCGCGCAGTTGATTTTGCTTCACACAGCATCAA
TGTTGTGGTGCCATCCAGTAGCGCGACACCGTTGCCTTTCCATATCGTTCCCGACGTGAAGACTGAAGGACATCTTGGCGGTTCCTCCTCAATCAAGGGCTTCTTCCTAA
CTTCACTGTCTTATGAGCCCTTGCAACTAAATGAGAATCTGAGTTATCAGGAGAAACCCATTCAAATATTGGAAAGAGAAGTAAAGACCTTGCGCAAGAGAGAAATACCG
CTGGTAAAGGTTAGAACTTTCGAGGACGAAAGTTTCCTAAGGAGGGAAGAATGTGACGACCCAATTTTTGAGCAAGAAGAAAGTATCTCTATCCGGGTGTGTTTTGGTGG
GTGTTCTCTTTCATTTCTGGTTGTTAGGGGGCGATCTCGTGCCTTGAGTATCGCTCCAGGTATTACTCGAATTTCGACTAGTGAATCTCGCGAGTCGTTTGATAGTTTTG
CTCGGTATCGTAGGTTCGCTCAAACTAATGGATCTCGCTCACCAATTGCAGGCTTCCCTTGTGTTTTGAGTGTTGCTGGTCGCCAGTTGTGCAAGTCTCGCTCAATCCAA
TTGTCTCATAGGTGGTGGTTGCTGCAGAAGTTCTTGGTTATTGTAAGGTGCGATGATTGCCCTTTTAGTGCTACTATGTTATCGGAGACCGACGAGTTTCCTGTTATGTT
ATCAGAGACTAACGGATTTTCTACTATGTTATCGGACATCGACGGGTACCATGCTACGTTTGTGAGCCTTCGGGCCACTAGTTGTGTACTAGGATGGGCTAAATCACTTA
CCAAATGGCGATGA
Protein sequenceShow/hide protein sequence
MSPHKARRVIDQIHGRSYEETMMILELMPYRACYPILKLVYSAAANASRNVEIGLNWLEKGQTGPPEPFRKLSGTFPEKVKLHVKSQPNGKSNLLKKVKLFRMRGTYQEK
VDETYREEFDETLRKRSTELTRKSNLLGKSNFQALNLRNLLGSVKLAELTKKSQLTWKVKLSDAEPAELTQKGQLIGKVTFLGAESAEITGNEPAKLTGKQRREPYREAE
SPNLIEKHDRNLPENQTARTYREAEPRAVDFASHSINVVVPSSSATPLPFHIVPDVKTEGHLGGSSSIKGFFLTSLSYEPLQLNENLSYQEKPIQILEREVKTLRKREIP
LVKVRTFEDESFLRREECDDPIFEQEESISIRVCFGGCSLSFLVVRGRSRALSIAPGITRISTSESRESFDSFARYRRFAQTNGSRSPIAGFPCVLSVAGRQLCKSRSIQ
LSHRWWLLQKFLVIVRCDDCPFSATMLSETDEFPVMLSETNGFSTMLSDIDGYHATFVSLRATSCVLGWAKSLTKWR