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Clc04G00570 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00570
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionS locus-related glycoprotein 1 binding pollen coat
Genome locationClcChr04:1772495..1773243
RNA-Seq ExpressionClc04G00570
SyntenyClc04G00570
Gene Ontology termsNA
InterPro domainsIPR010851 - Defensin-like protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07492.1 hypothetical protein Prudu_019451 [Prunus dulcis]2.3e-0648.28Show/hide
Query:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        VPQ A A ++C ++LY  GCT  DCG+KC + HH+  ++CI  +   T+YACYC F C
Subjt:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

CAB4286917.1 unnamed protein product [Prunus armeniaca]4.7e-0750Show/hide
Query:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        VPQ A A ++C+++LY  GCT LDCG+KC   HH+A H C+  +    +YACYC F C
Subjt:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

KAA0042348.1 S locus-related glycoprotein 1 binding pollen coat [Cucumis melo var. makuwa]6.6e-1756.67Show/hide
Query:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ
        MT L  S +  I L  A        VAMILVPQGA A ++CQD+LY  GCT  DCGQKC + HH+A+HQCIPTD   T YACYCF+ C Q
Subjt:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ

KAE8649772.1 hypothetical protein Csa_012405, partial [Cucumis sativus]1.7e-1258.06Show/hide
Query:  AMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        A++L  Q  SAAQ+CQD LY  GC   DCG+KC + HH  +HQCIPT+ + T YACYCFF C
Subjt:  AMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

KGN64987.1 hypothetical protein Csa_022748 [Cucumis sativus]1.4e-1456.82Show/hide
Query:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        MT L  S +  I+LI A        VAMI +PQGA AA +CQD LY  GCT  DCGQKC + HH A+ QCIPTD   T YACYCF+TC
Subjt:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

TrEMBL top hitse value%identityAlignment
A0A0A0KYP7 Uncharacterized protein4.7e-2162.22Show/hide
Query:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ
        M NL   RVA I++IFA        V+MILVPQG SA  KCQDRLYVGGC   +CGQKC QLHH  T +CI TD TFT YACYCF+ CP+
Subjt:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ

A0A0A0L2R3 Uncharacterized protein1.6e-1352.44Show/hide
Query:  SRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        SR+    LIFA        VA++L  Q  SAAQ+CQD LY  GC   DCG+KC + HH  +HQCIPT+ + T YACYCFF C
Subjt:  SRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

A0A0A0LVZ5 Uncharacterized protein6.6e-1556.82Show/hide
Query:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        MT L  S +  I+LI A        VAMI +PQGA AA +CQD LY  GCT  DCGQKC + HH A+ QCIPTD   T YACYCF+TC
Subjt:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

A0A5A7THQ7 S locus-related glycoprotein 1 binding pollen coat3.2e-1756.67Show/hide
Query:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ
        MT L  S +  I L  A        VAMILVPQGA A ++CQD+LY  GCT  DCGQKC + HH+A+HQCIPTD   T YACYCF+ C Q
Subjt:  MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQ

A0A6J5VH03 Uncharacterized protein2.3e-0750Show/hide
Query:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC
        VPQ A A ++C+++LY  GCT LDCG+KC   HH+A H C+  +    +YACYC F C
Subjt:  VPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAATCTTCCTGTTTCTCGCGTTGCCTTCATTATGCTTATCTTTGCAGTGTTATCTGAGAATAAGTGCATCGTTGCAATGATTTTGGTACCTCAAGGAGCCTCAGC
AGCTCAAAAATGTCAAGATAGATTGTACGTTGGCGGGTGCACGCCACTTGATTGTGGACAAAAGTGCAGGCAGCTACACCATAATGCAACGCATCAATGCATACCTACTG
ATGAAACGTTTACAAACTATGCTTGTTATTGTTTCTTTACTTGTCCTCAAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACAAATCTTCCTGTTTCTCGCGTTGCCTTCATTATGCTTATCTTTGCAGTGTTATCTGAGAATAAGTGCATCGTTGCAATGATTTTGGTACCTCAAGGAGCCTCAGC
AGCTCAAAAATGTCAAGATAGATTGTACGTTGGCGGGTGCACGCCACTTGATTGTGGACAAAAGTGCAGGCAGCTACACCATAATGCAACGCATCAATGCATACCTACTG
ATGAAACGTTTACAAACTATGCTTGTTATTGTTTCTTTACTTGTCCTCAAACTTGA
Protein sequenceShow/hide protein sequence
MTNLPVSRVAFIMLIFAVLSENKCIVAMILVPQGASAAQKCQDRLYVGGCTPLDCGQKCRQLHHNATHQCIPTDETFTNYACYCFFTCPQT