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Clc04G00610 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00610
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING-type domain-containing protein
Genome locationClcChr04:1868512..1869094
RNA-Seq ExpressionClc04G00610
SyntenyClc04G00610
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0009987 - cellular process (biological process)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603243.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. sororia]8.7e-2436.6Show/hide
Query:  STSTPIHCRLYGTGNE----------LRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFAN-----SSPHS----------TLAPPLP
        + STPI  RLY    +          +R F R IS S   G PP+IL ET PTP ++A F LS RQL DP  +     S+ H            +A  + 
Subjt:  STSTPIHCRLYGTGNE----------LRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFAN-----SSPHS----------TLAPPLP

Query:  KLLLGKSFPTSSRCVMETEKGISISSRRLIDGRTINGRSTGFGGGEGL---------------------------EKEGLGDCIICLDELGCEKREVIRI
        +L  G    TS   V+E +   +I   +      + G   G G G GL                           E++ LGDC ICLDE+  +KREVIR 
Subjt:  KLLLGKSFPTSSRCVMETEKGISISSRRLIDGRTINGRSTGFGGGEGL---------------------------EKEGLGDCIICLDELGCEKREVIRI

Query:  PCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT
        PCGHVYHESCIF+WL  H+SCPLC +P+ +  ++T
Subjt:  PCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT

XP_004144954.1 uncharacterized protein LOC101214496 [Cucumis sativus]1.0e-2739.44Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G
        S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS RQLQ P           N  P ++  +A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G

Query:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL
        ++  T+   + E +             G       ++D       R  G   GE L    + E LGDC ICLDEL CEKREV+RIPCGHVYHESCIFKWL
Subjt:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL

Query:  KDHSSCPLCIKPI
        ++H+SCPLC KP+
Subjt:  KDHSSCPLCIKPI

XP_011659694.1 E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus]1.0e-2739.44Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G
        S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS RQLQ P           N  P ++  +A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G

Query:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL
        ++  T+   + E +             G       ++D       R  G   GE L    + E LGDC ICLDEL CEKREV+RIPCGHVYHESCIFKWL
Subjt:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL

Query:  KDHSSCPLCIKPI
        ++H+SCPLC KP+
Subjt:  KDHSSCPLCIKPI

XP_016899530.1 PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo]1.1e-2939.73Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G
        S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ RQLQ P      F +S     +   ++A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G

Query:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW
        ++   +   + E            E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEKREVIRIPCGHVYHESCIFKW
Subjt:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW

Query:  LKDHSSCPLCIKPIAIASE
        LK+H+SCPLC KP+ +  +
Subjt:  LKDHSSCPLCIKPIAIASE

XP_038883574.1 E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]2.1e-3340.81Show/hide
Query:  STSTPIHCRLYGTGN---------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFANSSPHST---LAPPLPKL-----------
        + STPI  RLYGTG+         +  YFER IS SPV G PPRILHETP  PFHNA F LS  QLQ+P    S   +   + P   ++           
Subjt:  STSTPIHCRLYGTGN---------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFANSSPHST---LAPPLPKL-----------

Query:  LLGKSFPTSSRCVMETE--KGISISSRRLIDGRTINGRSTGFGGG----EGLEK------------EGLGDCIICLDELGCEKREVIRIPCGHVYHESCI
        ++ ++  ++ R + E +  + I +    +  G  +   +  F        G+EK            E LGDC ICL+EL CEKREVIRIPCGHVYHESC+
Subjt:  LLGKSFPTSSRCVMETE--KGISISSRRLIDGRTINGRSTGFGGG----EGLEK------------EGLGDCIICLDELGCEKREVIRIPCGHVYHESCI

Query:  FKWLKDHSSCPLCIKPIAIASET
        FKWL+ ++SCPLC KP+ +  ++
Subjt:  FKWLKDHSSCPLCIKPIAIASET

TrEMBL top hitse value%identityAlignment
A0A0A0K2W2 RING-type domain-containing protein4.8e-2839.44Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G
        S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS RQLQ P           N  P ++  +A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G

Query:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL
        ++  T+   + E +             G       ++D       R  G   GE L    + E LGDC ICLDEL CEKREV+RIPCGHVYHESCIFKWL
Subjt:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL

Query:  KDHSSCPLCIKPI
        ++H+SCPLC KP+
Subjt:  KDHSSCPLCIKPI

A0A0A0K696 RING-type domain-containing protein4.8e-2839.44Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G
        S PI  RLY +G          + + ++ IS SP+ G P  +LH+TP  P+HNA F LS RQLQ P           N  P ++  +A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPF---------ANSSPHST--LAPPLPKLLL---G

Query:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL
        ++  T+   + E +             G       ++D       R  G   GE L    + E LGDC ICLDEL CEKREV+RIPCGHVYHESCIFKWL
Subjt:  KSFPTSSRCVMETE------------KGISISSRRLID-GRTINGRSTGFGGGEGL----EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWL

Query:  KDHSSCPLCIKPI
        ++H+SCPLC KP+
Subjt:  KDHSSCPLCIKPI

A0A1S4DUZ4 E3 ubiquitin-protein ligase RNF181-like5.2e-3039.73Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G
        S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ RQLQ P      F +S     +   ++A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G

Query:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW
        ++   +   + E            E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEKREVIRIPCGHVYHESCIFKW
Subjt:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW

Query:  LKDHSSCPLCIKPIAIASE
        LK+H+SCPLC KP+ +  +
Subjt:  LKDHSSCPLCIKPIAIASE

A0A5D3E1S5 E3 ubiquitin-protein ligase RNF181-like protein5.2e-3039.73Show/hide
Query:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G
        S PI  RLYG+G          + +FE+ IS SPV G P +ILH+TP  P+HNA   L+ RQLQ P      F +S     +   ++A  +   +L    
Subjt:  STPIHCRLYGTGN--------ELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP------FANS-----SPHSTLAPPLPKLLL---G

Query:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW
        ++   +   + E            E+ +   +   +   +      R  G   GE L+     E LGDC ICLDEL CEKREVIRIPCGHVYHESCIFKW
Subjt:  KSFPTSSRCVMET-----------EKGISISSRRLI---DGRTINGRSTGFGGGEGLEK----EGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKW

Query:  LKDHSSCPLCIKPIAIASE
        LK+H+SCPLC KP+ +  +
Subjt:  LKDHSSCPLCIKPIAIASE

A0A6J1EKL4 E3 ubiquitin-protein ligase arkadia-like3.0e-2237.32Show/hide
Query:  LRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP-------FANSSPHST--------LAPPLPKLLLGKSFPTSSRCVMETEKGISISS
        +R F R IS S   G PP+IL ET PTP ++A F LS RQL DP        +    H+         +A  + +L  G    TS   V+E +   +I  
Subjt:  LRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDP-------FANSSPHST--------LAPPLPKLLLGKSFPTSSRCVMETEKGISISS

Query:  RRLIDGRTINGRSTGFGGGEGL---------------------------EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIK
         +      + G   G G G GL                           E++ LGDC ICLDE+  +KREVIR PCGHVYHESCIF+WL  H+SCPLC +
Subjt:  RRLIDGRTINGRSTGFGGGEGL---------------------------EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIK

Query:  PIAIASETT
        P+ +  ++T
Subjt:  PIAIASETT

SwissProt top hitse value%identityAlignment
Q641J8 E3 ubiquitin-protein ligase RNF12-A2.7e-0736.84Show/hide
Query:  EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS
        E + L  C +C+ E   E  ++ ++PC H YH  CI +WL ++S+CP+C + + +AS
Subjt:  EKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS

Q9BV68 E3 ubiquitin-protein ligase RNF1264.5e-0736.92Show/hide
Query:  GEGLEKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETTH
        G GLE      C +C D+    +R V ++PC H++H+ CI  WL+ H SCP+C K +   +  T+
Subjt:  GEGLEKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETTH

Q9H9V4 RING finger protein 1223.5e-0743.4Show/hide
Query:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT
        C +CL++    K E+  +PC H +H  C+ KWL+    CP+C KPIA  SE T
Subjt:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETT

Q9VHI7 E3 ubiquitin-protein ligase Iruka1.6e-0746.81Show/hide
Query:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIA
        C IC D+   ++  V ++PC H+YHE+CI  WL  HS+CP+C K +A
Subjt:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIA

Q9Y7K6 Uncharacterized RING finger protein C2A9.04c4.5e-0737.29Show/hide
Query:  EGLEKEGLGD--CIICLDELG-CEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI
        E L  + L D  C IC D++   ++++  ++PCGH++ ++C+ KWL++H +CPLC K +
Subjt:  EGLEKEGLGD--CIICLDELG-CEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI

Arabidopsis top hitse value%identityAlignment
AT1G18770.1 RING/U-box superfamily protein1.1e-0850Show/hide
Query:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLC
        CIICL+E   E R V+ +PCGH + + C+ KW + + SCPLC
Subjt:  CIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLC

AT2G40830.1 RING-H2 finger C1A4.2e-0843.4Show/hide
Query:  DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS
        +C +C D  ELG E ++   +PC H+YH  CI  WL  H+SCP+C + +  AS
Subjt:  DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS

AT2G40830.2 RING-H2 finger C1A4.2e-0843.4Show/hide
Query:  DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS
        +C +C D  ELG E ++   +PC H+YH  CI  WL  H+SCP+C + +  AS
Subjt:  DCIICLD--ELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIAS

AT5G05530.1 RING/U-box superfamily protein2.5e-0840.82Show/hide
Query:  LGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI
        + +C ICL+EL  ++  +    C HV+H+ C+++W++  SSCPLC  PI
Subjt:  LGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPI

AT5G41430.1 RING/U-box superfamily protein2.5e-0852.83Show/hide
Query:  LEKEGLGD--CIICLDELGCEKREVIRI-PCGHVYHESCIFKWLKDHSSCPLC
        +EKEG  +  C ICL+EL  +  E+IRI  C HV+H SCI  WLK + SCP C
Subjt:  LEKEGLGD--CIICLDELGCEKREVIRI-PCGHVYHESCIFKWLKDHSSCPLC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACTTCTACTCCTATTCACTGTCGTCTGTACGGCACCGGCAATGAATTACGCTATTTCGAACGTACCATCTCTGACTCTCCGGTCGCCGGACATCCGCCGCGAAT
CCTCCATGAAACTCCACCCACTCCATTCCACAATGCACGCTTCTCTCTCTCTTCGCGCCAACTTCAAGATCCCTTCGCCAATTCCTCTCCTCACTCCACATTAGCCCCAC
CGCTTCCGAAGTTATTGCTGGGCAAATCGTTTCCTACATCGTCCAGATGTGTAATGGAAACAGAGAAAGGAATTTCTATATCATCGCGGAGGTTGATTGATGGAAGAACA
ATCAATGGCCGGAGTACCGGATTCGGCGGTGGAGAGGGTTTGGAGAAGGAGGGTTTGGGAGATTGCATTATCTGTTTGGATGAATTGGGTTGTGAAAAGAGGGAGGTGAT
AAGGATCCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAAGGACCACAGTTCTTGCCCATTGTGTATTAAGCCCATTGCCATTGCAAGTGAAACAA
CTCATTTTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACTTCTACTCCTATTCACTGTCGTCTGTACGGCACCGGCAATGAATTACGCTATTTCGAACGTACCATCTCTGACTCTCCGGTCGCCGGACATCCGCCGCGAAT
CCTCCATGAAACTCCACCCACTCCATTCCACAATGCACGCTTCTCTCTCTCTTCGCGCCAACTTCAAGATCCCTTCGCCAATTCCTCTCCTCACTCCACATTAGCCCCAC
CGCTTCCGAAGTTATTGCTGGGCAAATCGTTTCCTACATCGTCCAGATGTGTAATGGAAACAGAGAAAGGAATTTCTATATCATCGCGGAGGTTGATTGATGGAAGAACA
ATCAATGGCCGGAGTACCGGATTCGGCGGTGGAGAGGGTTTGGAGAAGGAGGGTTTGGGAGATTGCATTATCTGTTTGGATGAATTGGGTTGTGAAAAGAGGGAGGTGAT
AAGGATCCCGTGCGGGCATGTGTATCATGAATCATGCATCTTCAAGTGGCTTAAGGACCACAGTTCTTGCCCATTGTGTATTAAGCCCATTGCCATTGCAAGTGAAACAA
CTCATTTTTCATGA
Protein sequenceShow/hide protein sequence
MSTSTPIHCRLYGTGNELRYFERTISDSPVAGHPPRILHETPPTPFHNARFSLSSRQLQDPFANSSPHSTLAPPLPKLLLGKSFPTSSRCVMETEKGISISSRRLIDGRT
INGRSTGFGGGEGLEKEGLGDCIICLDELGCEKREVIRIPCGHVYHESCIFKWLKDHSSCPLCIKPIAIASETTHFS