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Clc04G00710 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00710
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description40S ribosomal protein S25
Genome locationClcChr04:2177625..2180151
RNA-Seq ExpressionClc04G00710
SyntenyClc04G00710
Gene Ontology termsGO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR004977 - Ribosomal protein S25


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFK40360.1 unknown [Lotus japonicus]2.7e-4695.37Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLR+NGSLARRAIR+LMARGSIR+VSAH+SQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

GAV70343.1 Ribosomal_S25 domain-containing protein [Cephalotus follicularis]1.2e-4696.3Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE PK+KLITPSILSDRLRINGSLARRAIRDLMARGSIR++SAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

KAG9444381.1 hypothetical protein H6P81_015721 [Aristolochia fimbriata]2.7e-4696.3Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE PK+KLITPSILSDRLRINGSLARRAIRDLMARGSIRLVS+H+SQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_004291591.1 PREDICTED: 40S ribosomal protein S25-2 [Fragaria vesca subsp. vesca]9.5e-4796.3Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI+DLMARGSIR++SAH+SQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

XP_008442240.1 PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]5.5e-4797.22Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI+DLMARGSIRL+SAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

TrEMBL top hitse value%identityAlignment
A0A1Q3BRK1 40S ribosomal protein S256.0e-4796.3Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSE PK+KLITPSILSDRLRINGSLARRAIRDLMARGSIR++SAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A1S3B608 40S ribosomal protein S252.7e-4797.22Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAI+DLMARGSIRL+SAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A2N9J628 40S ribosomal protein S254.6e-4797.22Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIR+VS HSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

A0A6J1CLE7 40S ribosomal protein S251.3e-4695.37Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSEAPK+KLITPSILSDRLRINGSLARRAI+DLMARGSIRL+SAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

I3TAL6 40S ribosomal protein S251.3e-4695.37Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLR+NGSLARRAIR+LMARGSIR+VSAH+SQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

SwissProt top hitse value%identityAlignment
P46301 40S ribosomal protein S252.2e-4690.74Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSEAPK+KLITPS+LSDRLRI+GSLAR+AIRDLMARGSIR+VSAH+SQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Q8GYL5 40S ribosomal protein S25-31.3e-4692.52Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIR+LMA+G+IR+VSAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATN
        IYTRAT+
Subjt:  IYTRATN

Q9SIK2 40S ribosomal protein S25-21.5e-4792.59Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+VSAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Q9SIW5 40S ribosomal protein S25-12.0e-4489.62Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SEAPKFKLITPSILSDRLRINGSLAR+AIRDLM +G+IR+VS HSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRAT
        I TRAT
Subjt:  IYTRAT

Q9T029 40S ribosomal protein S25-41.7e-4690.74Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+V+AHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

Arabidopsis top hitse value%identityAlignment
AT2G21580.1 Ribosomal protein S25 family protein1.1e-4892.59Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+VSAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT2G21580.2 Ribosomal protein S25 family protein7.7e-4791.67Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQGTYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+VSAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT4G34555.1 Ribosomal protein S25 family protein9.1e-4892.52Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIR+LMA+G+IR+VSAHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATN
        IYTRAT+
Subjt:  IYTRATN

AT4G39200.1 Ribosomal protein S25 family protein1.2e-4790.74Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+V+AHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT

AT4G39200.2 Ribosomal protein S25 family protein8.5e-4689.81Show/hide
Query:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ
        MAPKK+K PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNNMVLFDQ TYDKLL+EAPKFKLITPSILSDR+RINGSLARRAIR+LMA+G IR+V+AHSSQQ
Subjt:  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQ

Query:  IYTRATNT
        IYTRATNT
Subjt:  IYTRATNT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACCTAAGAAGGAAAAGGCTCCTCCTCCGTCTTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGT
GAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCGTCCATCCTTTCAGATAGATTAAGGATCAATG
GATCGTTGGCACGTCGGGCGATTAGGGATTTAATGGCAAGAGGTTCTATTAGGCTCGTATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACTAATACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACCTAAGAAGGAAAAGGCTCCTCCTCCGTCTTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGT
GAACAACATGGTATTGTTTGATCAGGGAACCTATGACAAGCTTCTTTCAGAAGCTCCAAAGTTCAAGCTTATTACTCCGTCCATCCTTTCAGATAGATTAAGGATCAATG
GATCGTTGGCACGTCGGGCGATTAGGGATTTAATGGCAAGAGGTTCTATTAGGCTCGTATCTGCTCATTCTAGCCAGCAAATATACACTAGAGCCACTAATACATGA
Protein sequenceShow/hide protein sequence
MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRINGSLARRAIRDLMARGSIRLVSAHSSQQIYTRATNT