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Clc04G00735 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00735
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationClcChr04:2224852..2236121
RNA-Seq ExpressionClc04G00735
SyntenyClc04G00735
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031986.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.9e-0441.67Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTF--------LSEVAQSRSHS
        MAQKR+EEK++  DQEI+ I  E+  LP I E  SSLAKSVE   + A++QQ+  +   K +           + EV +S+ HS
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTF--------LSEVAQSRSHS

KAA0038345.1 peroxidase 64 [Cucumis melo var. makuwa]4.3e-0455.77Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQ
        MA KR+EEK+E  DQEI  I  ++ KLP IEE + S AKS+E L + A+KQQ
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQ

KAA0045921.1 uncharacterized protein E6C27_scaffold243G004600 [Cucumis melo var. makuwa]2.3e-0557.41Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT
        MAQKR+EEK+E  DQEI+ I  E+  LP I+E +SSLAKS+E L + A++QQ+T
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT

KAA0054161.1 uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa]7.8e-0640.59Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTFLSEVAQSRSHSNHQQQSKKKFTSGARETGKATVRD
        MAQKR+EEK+EA DQ+I+ I +E+ KLP IEE +SS AKS+E L + A+KQQ+  + L K +   + E   +         SK +      E   AT++D
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTFLSEVAQSRSHSNHQQQSKKKFTSGARETGKATVRD

Query:  S
        +
Subjt:  S

TYK13669.1 uncharacterized protein E5676_scaffold299G001870 [Cucumis melo var. makuwa]3.0e-0557.41Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT
        MAQKR+EEK+E  DQEI+ I  E+  LP I+E +SSLAKS+E L + A++QQ+T
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT

TrEMBL top hitse value%identityAlignment
A0A5A7SPQ8 Transposon Ty3-I Gag-Pol polyprotein9.3e-0541.67Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTF--------LSEVAQSRSHS
        MAQKR+EEK++  DQEI+ I  E+  LP I E  SSLAKSVE   + A++QQ+  +   K +           + EV +S+ HS
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTF--------LSEVAQSRSHS

A0A5A7TAD6 Peroxidase 642.1e-0455.77Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQ
        MA KR+EEK+E  DQEI  I  ++ KLP IEE + S AKS+E L + A+KQQ
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQ

A0A5A7TWS7 Uncharacterized protein1.1e-0557.41Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT
        MAQKR+EEK+E  DQEI+ I  E+  LP I+E +SSLAKS+E L + A++QQ+T
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT

A0A5A7UKU8 Uncharacterized protein3.8e-0640.59Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTFLSEVAQSRSHSNHQQQSKKKFTSGARETGKATVRD
        MAQKR+EEK+EA DQ+I+ I +E+ KLP IEE +SS AKS+E L + A+KQQ+  + L K +   + E   +         SK +      E   AT++D
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTFLSEVAQSRSHSNHQQQSKKKFTSGARETGKATVRD

Query:  S
        +
Subjt:  S

A0A5D3CTZ7 Uncharacterized protein1.4e-0557.41Show/hide
Query:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT
        MAQKR+EEK+E  DQEI+ I  E+  LP I+E +SSLAKS+E L + A++QQ+T
Subjt:  MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCAAAAGAGGTTGGAAGAGAAAATTGAAGCGACGGATCAAGAGATTGCAAGCATACATTTAGAGATTCAAAAGTTACCGATGATAGAGGAAACAATGTCATCACT
AGCAAAGAGTGTTGAAACATTGAATCTACACGCAGACAAGCAGCAGCGGACATCGAAGGATTTACGAAAAATATTATCGACATTTTTATCGGAAGTGGCGCAATCACGAT
CGCACTCAAATCACCAGCAACAAAGCAAAAAAAAGTTCACCTCAGGGGCACGGGAAACAGGGAAAGCAACGGTGAGAGATTCAGCAAGAGCAGGGGAATCACAGCAAACG
GAGCTTAAAGCAGCGGCAGTAGCAGCAAAGCCCATAACACATTTCCCAACAGACCCAATAAGTCTCGGCCCAGCAGGTTCAGTTCTAGACTCGCTGGCGGCGGCGAGGAC
CCTCCATTTCCGCCTTCCACGGTGGCCGGAGTTCGAAAACCGGCACAAACGGATCGAAGACGAAATGGGTGTGGGGAGATCGGGTGAAAATGGAGAAGAAGGGGGTGTTT
TGAAGTCGAGGGTCGGAAGAAGAGCCTCCATTTTGCAAGTGCAATTTTGCTTTAGTCTTCACAAGCTTAATAGGAATGTACCTTTATTTGCTTCCCAACCTTCTACTTTT
GCTCTTGCCTTAGCTTCTAGATGTTTAGCAACATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCAAAAGAGGTTGGAAGAGAAAATTGAAGCGACGGATCAAGAGATTGCAAGCATACATTTAGAGATTCAAAAGTTACCGATGATAGAGGAAACAATGTCATCACT
AGCAAAGAGTGTTGAAACATTGAATCTACACGCAGACAAGCAGCAGCGGACATCGAAGGATTTACGAAAAATATTATCGACATTTTTATCGGAAGTGGCGCAATCACGAT
CGCACTCAAATCACCAGCAACAAAGCAAAAAAAAGTTCACCTCAGGGGCACGGGAAACAGGGAAAGCAACGGTGAGAGATTCAGCAAGAGCAGGGGAATCACAGCAAACG
GAGCTTAAAGCAGCGGCAGTAGCAGCAAAGCCCATAACACATTTCCCAACAGACCCAATAAGTCTCGGCCCAGCAGGTTCAGTTCTAGACTCGCTGGCGGCGGCGAGGAC
CCTCCATTTCCGCCTTCCACGGTGGCCGGAGTTCGAAAACCGGCACAAACGGATCGAAGACGAAATGGGTGTGGGGAGATCGGGTGAAAATGGAGAAGAAGGGGGTGTTT
TGAAGTCGAGGGTCGGAAGAAGAGCCTCCATTTTGCAAGTGCAATTTTGCTTTAGTCTTCACAAGCTTAATAGGAATGTACCTTTATTTGCTTCCCAACCTTCTACTTTT
GCTCTTGCCTTAGCTTCTAGATGTTTAGCAACATAA
Protein sequenceShow/hide protein sequence
MAQKRLEEKIEATDQEIASIHLEIQKLPMIEETMSSLAKSVETLNLHADKQQRTSKDLRKILSTFLSEVAQSRSHSNHQQQSKKKFTSGARETGKATVRDSARAGESQQT
ELKAAAVAAKPITHFPTDPISLGPAGSVLDSLAAARTLHFRLPRWPEFENRHKRIEDEMGVGRSGENGEEGGVLKSRVGRRASILQVQFCFSLHKLNRNVPLFASQPSTF
ALALASRCLAT