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Clc04G00740 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00740
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionTy3/gypsy retrotransposon protein
Genome locationClcChr04:2225409..2226178
RNA-Seq ExpressionClc04G00740
SyntenyClc04G00740
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039714.1 protein arginine N-methyltransferase 1.6 isoform X2 [Cucumis melo var. makuwa]5.0e-4245.7Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRELV KE  L  +  +K+     
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D
        N ++V  P+  E   TN   PMRTITLR   T   RREG  KRLSDAEFQAR+EK                                  ELE+ E    D
Subjt:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D

Query:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
           E +P +L+  V N  +EL +N VVGL+NP T+K++G++  +++VVLID GATH
Subjt:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

KAA0061635.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-4244.92Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+     
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D
        N + +VNPS      T    PMRTITLR   T   RREG  KRL+DAEFQ+R+EK                                  ELE+ E    D
Subjt:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D

Query:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        A  E +P +++  V N  +EL +N VVGL+NP T+K++G++ +++VVVLID GATH
Subjt:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

KAA0063300.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.7e-4346.25Show/hide
Query:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK
        GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+     N +
Subjt:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK

Query:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----DANE
        + VNPS      T    PMRTITLR   T   RREG  KRL+DAEFQAR+EK                                  ELE+ E    DA  
Subjt:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----DANE

Query:  EFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        E +P  ++  V N  +EL +N VVGL+NPRT+K++G++ +++VVVLID GATH
Subjt:  EFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

TYK02488.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-4246.91Show/hide
Query:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK
        G +CGQFLAIKQET V+EY NLFDKLVA LPHL  EVLE TFMNGL PW+KAEVE WEPVGL  M+K+ QRV+N E+  +E +L  ++  K+ +  +  +
Subjt:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK

Query:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK----------------------DTELEVFED----ANEEFEPVKLKTM
        + VNP      K     PMRTITLRG T    RR+G  K+LSD EFQA ++K                      D E+E+ ED     N+E + ++ K  
Subjt:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK----------------------DTELEVFED----ANEEFEPVKLKTM

Query:  VVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
           + VEL +N +VGLSN  T+K++G+I  ++V+V I+ GATH
Subjt:  VVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-4145.31Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+   A 
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D
        N ++ +N S +    T    PMRTITLR   T   RREG  KRL+DAEFQAR+EK                                  ELE+ E    D
Subjt:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D

Query:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        A  E +P + K+ V N  +EL +N VVGL+NP T+K++G + +++VVVLID GATH
Subjt:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

TrEMBL top hitse value%identityAlignment
A0A5A7T8B8 Protein arginine N-methyltransferase 1.6 isoform X22.4e-4245.7Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRELV KE  L  +  +K+     
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D
        N ++V  P+  E   TN   PMRTITLR   T   RREG  KRLSDAEFQAR+EK                                  ELE+ E    D
Subjt:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D

Query:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
           E +P +L+  V N  +EL +N VVGL+NP T+K++G++  +++VVLID GATH
Subjt:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

A0A5A7V707 Ty3/gypsy retrotransposon protein1.1e-4244.92Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+     
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D
        N + +VNPS      T    PMRTITLR   T   RREG  KRL+DAEFQ+R+EK                                  ELE+ E    D
Subjt:  NNKSVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----D

Query:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        A  E +P +++  V N  +EL +N VVGL+NP T+K++G++ +++VVVLID GATH
Subjt:  ANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

A0A5A7V7S9 Ty3/gypsy retrotransposon protein3.7e-4346.25Show/hide
Query:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK
        GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+     N +
Subjt:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK

Query:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----DANE
        + VNPS      T    PMRTITLR   T   RREG  KRL+DAEFQAR+EK                                  ELE+ E    DA  
Subjt:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----DANE

Query:  EFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        E +P  ++  V N  +EL +N VVGL+NPRT+K++G++ +++VVVLID GATH
Subjt:  EFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

A0A5D3BU25 Ty3-gypsy retrotransposon protein1.4e-4246.91Show/hide
Query:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK
        G +CGQFLAIKQET V+EY NLFDKLVA LPHL  EVLE TFMNGL PW+KAEVE WEPVGL  M+K+ QRV+N E+  +E +L  ++  K+ +  +  +
Subjt:  GTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNK

Query:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK----------------------DTELEVFED----ANEEFEPVKLKTM
        + VNP      K     PMRTITLRG T    RR+G  K+LSD EFQA ++K                      D E+E+ ED     N+E + ++ K  
Subjt:  SVVNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK----------------------DTELEVFED----ANEEFEPVKLKTM

Query:  VVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
           + VEL +N +VGLSN  T+K++G+I  ++V+V I+ GATH
Subjt:  VVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

A0A5D3CXB1 Ty3/gypsy retrotransposon protein5.4e-4245.14Show/hide
Query:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN
        ++ GT+ G+FL IKQET V+EY N FDK +AP+  L   VLE TFMNGL PW+K+EVE WEPVGL  MMK+A +++NRE+V KE  L  +  +K+   A 
Subjt:  MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAAN

Query:  NNKSV-VNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----
        N +++  +P ++ T  T    PMRTITLR   T   RREG  KRL+DAEFQAR+EK                                  ELE+ E    
Subjt:  NNKSV-VNPSLKETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEK--------------------------------DTELEVFE----

Query:  DANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH
        DA  E +P + K+ V N  +EL +N VVGL+NP T+K++G + +++VVVLID GATH
Subjt:  DANEEFEPVKLKTMVVNNTVEL-LNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACGAGGTACGGTTTGTGGTCAATTTTTAGCCATTAAACAGGAAACAATAGTAAAAGAGTATATTAACTTGTTCGATAAGCTAGTAGCGCCTTTACCACATTTATC
GAATGAAGTTTTAGAGAATACGTTTATGAATGGGCTTGTTCCATGGGTGAAGGCAGAGGTAGAATGTTGGGAACCTGTTGGGCTGATGAATATGATGAAAGTGGCCCAAC
GAGTCAAAAATCGAGAGTTAGTGTGGAAGGAAACAAGCTTAGATTTCTCATTGATAAATAAGTCCCATAGTGCTGCAAATAATAATAAATCAGTGGTAAATCCATCATTG
AAGGAAACGATTAAAACTAATGAGGTAATACCGATGAGAACGATTACTTTGCGAGGAGCGACGACAAATGCTGTAAGAAGAGAAGGTCTAGTGAAGCGTTTATCGGATGC
TGAATTTCAAGCGCGGAAGGAGAAAGATACAGAATTGGAAGTTTTCGAGGATGCTAATGAAGAGTTTGAACCTGTTAAATTGAAGACTATGGTTGTGAATAATACGGTGG
AGTTGTTGAATTATGTAGTAGGATTATCGAACCCTAGAACTATAAAGATGAGGGGTGAAATTTCAAGGCAGAAGGTCGTCGTTCTAATTGACTATGGCGCTACACATGTT
TCATTGCTCATCGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACGAGGTACGGTTTGTGGTCAATTTTTAGCCATTAAACAGGAAACAATAGTAAAAGAGTATATTAACTTGTTCGATAAGCTAGTAGCGCCTTTACCACATTTATC
GAATGAAGTTTTAGAGAATACGTTTATGAATGGGCTTGTTCCATGGGTGAAGGCAGAGGTAGAATGTTGGGAACCTGTTGGGCTGATGAATATGATGAAAGTGGCCCAAC
GAGTCAAAAATCGAGAGTTAGTGTGGAAGGAAACAAGCTTAGATTTCTCATTGATAAATAAGTCCCATAGTGCTGCAAATAATAATAAATCAGTGGTAAATCCATCATTG
AAGGAAACGATTAAAACTAATGAGGTAATACCGATGAGAACGATTACTTTGCGAGGAGCGACGACAAATGCTGTAAGAAGAGAAGGTCTAGTGAAGCGTTTATCGGATGC
TGAATTTCAAGCGCGGAAGGAGAAAGATACAGAATTGGAAGTTTTCGAGGATGCTAATGAAGAGTTTGAACCTGTTAAATTGAAGACTATGGTTGTGAATAATACGGTGG
AGTTGTTGAATTATGTAGTAGGATTATCGAACCCTAGAACTATAAAGATGAGGGGTGAAATTTCAAGGCAGAAGGTCGTCGTTCTAATTGACTATGGCGCTACACATGTT
TCATTGCTCATCGAATAG
Protein sequenceShow/hide protein sequence
MKRGTVCGQFLAIKQETIVKEYINLFDKLVAPLPHLSNEVLENTFMNGLVPWVKAEVECWEPVGLMNMMKVAQRVKNRELVWKETSLDFSLINKSHSAANNNKSVVNPSL
KETIKTNEVIPMRTITLRGATTNAVRREGLVKRLSDAEFQARKEKDTELEVFEDANEEFEPVKLKTMVVNNTVELLNYVVGLSNPRTIKMRGEISRQKVVVLIDYGATHV
SLLIE