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Clc04G00780 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00780
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag/pol protein
Genome locationClcChr04:2244185..2244905
RNA-Seq ExpressionClc04G00780
SyntenyClc04G00780
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048103.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-1563.77Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LAS+KLNRDNY TWKSNLNTILV+DDLRF+LTEECP    SN NR  R+AYDR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

KAA0051181.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1572.88Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDN
        +LAS+KLN DNY TWKSNLNTILV+DDLRFILTEECP  L SNTNR  R+ YDR   +N
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDN

TYJ96447.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1569.84Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHR
        +LAS+KLNRDNY TWKSNLNTILV+DDLRF+LTEECP  L SN NR  R+AYDR    N   R
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHR

XP_022158568.1 uncharacterized protein LOC111025021 [Momordica charantia]6.8e-1666.67Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LASDKLN DNYG WKSNLNTILV+DDLRF+LTEECP A   N NR VRDAYDR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

XP_022158791.1 uncharacterized protein LOC111025258 [Momordica charantia]1.2e-1565.22Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LASDKLN DNYG WKSNLNTILV+DDLRF+LTEECP AL  N+N+ VRDA+DR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

TrEMBL top hitse value%identityAlignment
A0A5A7TWX1 Gag/pol protein2.1e-1563.77Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LAS+KLNRDNY TWKSNLNTILV+DDLRF+LTEECP    SN NR  R+AYDR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

A0A5A7UCD3 Gag/pol protein9.6e-1672.88Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDN
        +LAS+KLN DNY TWKSNLNTILV+DDLRFILTEECP  L SNTNR  R+ YDR   +N
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDN

A0A5D3BBF3 Gag/pol protein5.6e-1669.84Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHR
        +LAS+KLNRDNY TWKSNLNTILV+DDLRF+LTEECP  L SN NR  R+AYDR    N   R
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHR

A0A6J1DWG6 uncharacterized protein LOC1110250213.3e-1666.67Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LASDKLN DNYG WKSNLNTILV+DDLRF+LTEECP A   N NR VRDAYDR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

A0A6J1E205 uncharacterized protein LOC1110252585.6e-1665.22Show/hide
Query:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS
        +LASDKLN DNYG WKSNLNTILV+DDLRF+LTEECP AL  N+N+ VRDA+DR    N   R  ++ S
Subjt:  VLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGGTTTCTTGGCAATGGCTAGTTCTTGCTTCCGATAAACTTAACAGAGATAACTATGGTACTTGGAAGTCAAATCTTAATACAATACTGGTTATGGATGATCT
AAGGTTCATTTTAACAGAGGAATGTCCTCTAGCTCTCGGCTCAAACACAAACCGAAATGTTCGGGATGCATATGACAGGCAATGTTTGGACAACCATCCTCATCGGTCCG
GCATGATGCTATCAAATACATTTACAACTCTCACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGGTTTCTTGGCAATGGCTAGTTCTTGCTTCCGATAAACTTAACAGAGATAACTATGGTACTTGGAAGTCAAATCTTAATACAATACTGGTTATGGATGATCT
AAGGTTCATTTTAACAGAGGAATGTCCTCTAGCTCTCGGCTCAAACACAAACCGAAATGTTCGGGATGCATATGACAGGCAATGTTTGGACAACCATCCTCATCGGTCCG
GCATGATGCTATCAAATACATTTACAACTCTCACATGA
Protein sequenceShow/hide protein sequence
MDRVSWQWLVLASDKLNRDNYGTWKSNLNTILVMDDLRFILTEECPLALGSNTNRNVRDAYDRQCLDNHPHRSGMMLSNTFTTLT