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Clc04G00795 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00795
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationClcChr04:2250213..2251292
RNA-Seq ExpressionClc04G00795
SyntenyClc04G00795
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFS33695.1 hypothetical protein Acr_00g0030110 [Actinidia rufa]3.5e-2544.83Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        MSW Y+S+ E  +G+IVGY +A +IWEAL                     IKKDGL+   Y+ + + + +   +IGEP++Y DHL Y L GLG +YNPFV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+IQ++  RPSI +V +LL+ Y+  LE+Q AT+ L+ +QANLAN+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

GFY82848.1 hypothetical protein Acr_02g0010880 [Actinidia rufa]3.5e-2544.83Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        MSW Y+S+ E  +G+IVGY +A +IWEAL                     IKKDGL+   Y+ + + + +   +IGEP++Y DHL Y L GLG +YNPFV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+IQ++  RPSI +V +LL+ Y+  LE+Q AT+ L+ +QANLAN+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

XP_022148871.1 uncharacterized protein LOC111017438 [Momordica charantia]1.2e-2256.25Show/hide
Query:  RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        ++KKDGLSV+QYLA+IK+I  K ++IGEP+S +DH+ YI++GLG EYN FVT+IQNR+D  ++ DV  LL+ Y+  LEKQ + + LN++QAN+AN+
Subjt:  RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]6.5e-3251.72Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEAL----------RI--------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        M W YSSL E+K+GE+V  +T ++IW +L          RI         ++KDG SV+QYLA+IK+I DKF A+GEPLSYRDHL ++L GLG+EYN FV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEAL----------RI--------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+I NR D PS+ DV +LL+ YE  L+KQ   + LN+ QANL N+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

XP_038887133.1 uncharacterized protein LOC120077323 [Benincasa hispida]4.3e-3662.41Show/hide
Query:  VGEIVGYDTAYEIWEALRI------------------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSI
        +GEIVGY++A++IWEALR                   +IKKDGL+V+QYLAQIKD++D F AIGEPLSYRDHL YIL+GLG+EYNPFV++I NRT+RPSI
Subjt:  VGEIVGYDTAYEIWEALRI------------------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSI

Query:  ADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        ADV NLLI Y+  LEKQ AT+ L LIQAN+A++
Subjt:  ADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

TrEMBL top hitse value%identityAlignment
A0A6J1D6N7 uncharacterized protein LOC1110174385.9e-2356.25Show/hide
Query:  RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        ++KKDGLSV+QYLA+IK+I  K ++IGEP+S +DH+ YI++GLG EYN FVT+IQNR+D  ++ DV  LL+ Y+  LEKQ + + LN++QAN+AN+
Subjt:  RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

A0A6J1DQX7 uncharacterized protein LOC1110223153.1e-3251.72Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEAL----------RI--------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        M W YSSL E+K+GE+V  +T ++IW +L          RI         ++KDG SV+QYLA+IK+I DKF A+GEPLSYRDHL ++L GLG+EYN FV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEAL----------RI--------RIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+I NR D PS+ DV +LL+ YE  L+KQ   + LN+ QANL N+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

A0A7J0DER3 Uncharacterized protein1.7e-2544.83Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        MSW Y+S+ E  +G+IVGY +A +IWEAL                     IKKDGL+   Y+ + + + +   +IGEP++Y DHL Y L GLG +YNPFV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+IQ++  RPSI +V +LL+ Y+  LE+Q AT+ L+ +QANLAN+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

A0A7J0E8R3 Uncharacterized protein1.7e-2544.83Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        MSW Y+S+ E  +G+IVGY +A +IWEAL                     IKKDGL+   Y+ + + + +   +IGEP++Y DHL Y L GLG +YNPFV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV
        T+IQ++  RPSI +V +LL+ Y+  LE+Q AT+ L+ +QANLAN+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATNLLNLIQANLANV

A0A7J0EGI5 Uncharacterized protein8.6e-2242.86Show/hide
Query:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV
        MSW Y+S+ E  +G+IVGY +A +IWEAL                     IKK+GL+   Y+ + + + +   +IGEP++Y DHL Y L GLG +YNPFV
Subjt:  MSWFYSSLIEDKVGEIVGYDTAYEIWEALR------------------IRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFV

Query:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATN
        T+IQ++  RPSI +V +LL+ Y+  LE+Q AT+
Subjt:  TTIQNRTDRPSIADVCNLLIIYEVCLEKQIATN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTGGTTCTACTCCTCACTTATTGAAGACAAGGTGGGTGAAATAGTTGGCTACGATACTGCTTATGAAATTTGGGAGGCATTGCGCATAAGAATCAAGAAAGATGG
TCTCTCTGTGGCTCAGTATTTGGCTCAGATCAAGGACATCGTCGATAAATTTAATGCAATTGGAGAACCCTTGTCTTATAGAGATCATTTGGGATATATCCTCAAAGGAC
TTGGAAATGAATATAATCCTTTTGTGACTACAATTCAAAATCGTACTGATCGTCCTTCTATTGCAGATGTCTGCAATTTACTCATTATTTATGAAGTTTGTCTGGAGAAA
CAAATAGCCACTAATCTGTTAAATTTGATTCAAGCCAATCTTGCAAATGTCTTAAGTCTATTTAAAGGACAATTTATTCCATCCGAGGGGCATCAATTCTTCATGGGATC
TAAACCTAAGGCAAAGCTCTGCCATCTAGAAGAGTGCACTGCTGCTGGTGATCAATTCGAGGCCCGAAGACGAAGGTCGGGGGTCAAGATTGGGAGACGGCAACGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTGGTTCTACTCCTCACTTATTGAAGACAAGGTGGGTGAAATAGTTGGCTACGATACTGCTTATGAAATTTGGGAGGCATTGCGCATAAGAATCAAGAAAGATGG
TCTCTCTGTGGCTCAGTATTTGGCTCAGATCAAGGACATCGTCGATAAATTTAATGCAATTGGAGAACCCTTGTCTTATAGAGATCATTTGGGATATATCCTCAAAGGAC
TTGGAAATGAATATAATCCTTTTGTGACTACAATTCAAAATCGTACTGATCGTCCTTCTATTGCAGATGTCTGCAATTTACTCATTATTTATGAAGTTTGTCTGGAGAAA
CAAATAGCCACTAATCTGTTAAATTTGATTCAAGCCAATCTTGCAAATGTCTTAAGTCTATTTAAAGGACAATTTATTCCATCCGAGGGGCATCAATTCTTCATGGGATC
TAAACCTAAGGCAAAGCTCTGCCATCTAGAAGAGTGCACTGCTGCTGGTGATCAATTCGAGGCCCGAAGACGAAGGTCGGGGGTCAAGATTGGGAGACGGCAACGGTGA
Protein sequenceShow/hide protein sequence
MSWFYSSLIEDKVGEIVGYDTAYEIWEALRIRIKKDGLSVAQYLAQIKDIVDKFNAIGEPLSYRDHLGYILKGLGNEYNPFVTTIQNRTDRPSIADVCNLLIIYEVCLEK
QIATNLLNLIQANLANVLSLFKGQFIPSEGHQFFMGSKPKAKLCHLEECTAAGDQFEARRRRSGVKIGRRQR