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Clc04G00805 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00805
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionGag-pol polyprotein
Genome locationClcChr04:2281337..2284168
RNA-Seq ExpressionClc04G00805
SyntenyClc04G00805
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033858.1 Receptor-like protein 12 [Cucumis melo var. makuwa]7.0e-0842.55Show/hide
Query:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN
        R+          VE +      ST K +  S  R +DHGK     QD+  + FRCR+C+G+ HYQAECP FL+ + K+Y+ATLSD D +DD  N
Subjt:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN

KAA0037333.1 Ulp1-like peptidase [Cucumis melo var. makuwa]1.2e-0741.38Show/hide
Query:  TLKSSQSSNRKT-DHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ
        T K+ + SNR+  DHGK     ++  ++ FRCR+CEG+ HY+AECP FL+ + K+Y+ATLS N+D DD   ++ D  ++    C+++
Subjt:  TLKSSQSSNRKT-DHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ

KAA0037814.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.8e-1044.05Show/hide
Query:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQSSVK
        S  R +DHGK     ++   K FRCR CEG+ HYQAECP +LK + K+Y+ATLSD D +DD    + D  ++A + C+++ ++K
Subjt:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQSSVK

KAA0050476.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.1e-0845Show/hide
Query:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ
        S  R +DHGK     +DL  + FRCR+CEG+ HYQ ECP +LK + K+Y+ATLSD D +DD      D  ++A   C+++
Subjt:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ

TYK01241.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.0e-0842.55Show/hide
Query:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN
        R+          VE +      ST K +  S  R +DHGK     QD+  + FRCR+C+G+ HYQAECP FL+ + K+Y+ATLSD D +DD  N
Subjt:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN

TrEMBL top hitse value%identityAlignment
A0A5A7STB1 Receptor-like protein 123.4e-0842.55Show/hide
Query:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN
        R+          VE +      ST K +  S  R +DHGK     QD+  + FRCR+C+G+ HYQAECP FL+ + K+Y+ATLSD D +DD  N
Subjt:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN

A0A5A7T2X1 Gag-pol polyprotein2.8e-1044.05Show/hide
Query:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQSSVK
        S  R +DHGK     ++   K FRCR CEG+ HYQAECP +LK + K+Y+ATLSD D +DD    + D  ++A + C+++ ++K
Subjt:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQSSVK

A0A5A7T2Y7 Ulp1-like peptidase5.8e-0841.38Show/hide
Query:  TLKSSQSSNRKT-DHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ
        T K+ + SNR+  DHGK     ++  ++ FRCR+CEG+ HY+AECP FL+ + K+Y+ATLS N+D DD   ++ D  ++    C+++
Subjt:  TLKSSQSSNRKT-DHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ

A0A5A7U8G9 Gag-pol polyprotein2.0e-0845Show/hide
Query:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ
        S  R +DHGK     +DL  + FRCR+CEG+ HYQ ECP +LK + K+Y+ATLSD D +DD      D  ++A   C+++
Subjt:  SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQ

A0A5D3BN60 Gag-pol polyprotein3.4e-0842.55Show/hide
Query:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN
        R+          VE +      ST K +  S  R +DHGK     QD+  + FRCR+C+G+ HYQAECP FL+ + K+Y+ATLSD D +DD  N
Subjt:  REVSQSGNVFSNVEDNFSPARRSTLKSSQ-SSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTCGTTGGAGAACTCTGTTATAGCCATAGTTGATTCAAACGAACAAGAAGAAGCTCAGTCGTTCAATGAAAGCTATGCATCAAGCTACTTTGTTACTGCATTGTT
GGCTACAGTTATTTTCTTTTATCTAGTTGTTGCTGATGTTGTTACCTTATTGCGTGGCTTATTTTTTGGAATATATTTTTCCTTGTTTGGTGATTTTGCAGTTTTGAAGT
TCGGAAAGGCTCTCAGAAGATGGGATAAACGCGAGGTGTCTCAAAGTGGCAATGTGTTTTCTAATGTTGAAGACAATTTTAGTCCGGCTAGGCGCTCAACGCTGAAATCC
TCTCAATCATCTAATCGAAAGACTGATCATGGAAAAGGTTATGGATTTAGTCAAGATTTAAGAGACAAAAAGTTTAGATGTAGAAAGTGTGAGGGATACAGACATTATCA
AGCTGAATGTCCTAATTTTCTAAAGAGTAAGAACAAAAGTTATTTTGCTACTCTATCAGACAATGATGATGAGGATGATGTCTCAAATAGTGATTTCGATGAAGAAATTC
ACGCCTTAATGGGCTGTTTATCTCAAAGCAGTGTCAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCGTTGGAGAACTCTGTTATAGCCATAGTTGATTCAAACGAACAAGAAGAAGCTCAGTCGTTCAATGAAAGCTATGCATCAAGCTACTTTGTTACTGCATTGTT
GGCTACAGTTATTTTCTTTTATCTAGTTGTTGCTGATGTTGTTACCTTATTGCGTGGCTTATTTTTTGGAATATATTTTTCCTTGTTTGGTGATTTTGCAGTTTTGAAGT
TCGGAAAGGCTCTCAGAAGATGGGATAAACGCGAGGTGTCTCAAAGTGGCAATGTGTTTTCTAATGTTGAAGACAATTTTAGTCCGGCTAGGCGCTCAACGCTGAAATCC
TCTCAATCATCTAATCGAAAGACTGATCATGGAAAAGGTTATGGATTTAGTCAAGATTTAAGAGACAAAAAGTTTAGATGTAGAAAGTGTGAGGGATACAGACATTATCA
AGCTGAATGTCCTAATTTTCTAAAGAGTAAGAACAAAAGTTATTTTGCTACTCTATCAGACAATGATGATGAGGATGATGTCTCAAATAGTGATTTCGATGAAGAAATTC
ACGCCTTAATGGGCTGTTTATCTCAAAGCAGTGTCAAGTGA
Protein sequenceShow/hide protein sequence
MISLENSVIAIVDSNEQEEAQSFNESYASSYFVTALLATVIFFYLVVADVVTLLRGLFFGIYFSLFGDFAVLKFGKALRRWDKREVSQSGNVFSNVEDNFSPARRSTLKS
SQSSNRKTDHGKGYGFSQDLRDKKFRCRKCEGYRHYQAECPNFLKSKNKSYFATLSDNDDEDDVSNSDFDEEIHALMGCLSQSSVK