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Clc04G00850 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00850
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr04:2556154..2558395
RNA-Seq ExpressionClc04G00850
SyntenyClc04G00850
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027096156.1 uncharacterized protein LOC113716055 [Coffea arabica]3.7e-0531.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+    +   C +C+  GHT+ +CPQL    +  A  +     P   Y + S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

XP_027118330.1 uncharacterized protein LOC113735530 [Coffea arabica]6.4e-0531.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

XP_027120514.1 uncharacterized protein LOC113737484 [Coffea arabica]3.7e-0531.93Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ ACPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

XP_027124317.1 uncharacterized protein LOC113741019 [Coffea arabica]9.8e-0631.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

XP_027172204.1 uncharacterized protein LOC113771846 [Coffea eugenioides]8.3e-0530.43Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSY-----------RGQAEQQIPQTASQGAEDPRASI
          SY           R Q  QQ  QT +Q + +P  S+
Subjt:  WKSY-----------RGQAEQQIPQTASQGAEDPRASI

TrEMBL top hitse value%identityAlignment
A0A6P6TC26 uncharacterized protein LOC1136998615.3e-0531.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

A0A6P6V0B6 uncharacterized protein LOC1137160551.8e-0531.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+    +   C +C+  GHT+ +CPQL    +  A  +     P   Y + S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGN-SHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

A0A6P6WSN8 uncharacterized protein LOC1137355303.1e-0531.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSY-GNSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

A0A6P6WYK5 uncharacterized protein LOC1137374841.8e-0531.93Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+        C +C+  GHT+ ACPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

A0A6P6XE77 uncharacterized protein LOC1137410194.8e-0631.09Show/hide
Query:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP
        C + GT+ +    +++E+ S      LSELTS +R++A+  +     C +C+  GHT+ +CPQL    +  A  +     P   Y   S++Y+ GW D P
Subjt:  CARHGTQHNEQVSELSEIRSC-----LSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYG-NSHAYHYGWEDQP

Query:  WKSYRGQAEQQIPQTASQG
          SY G  +Q       QG
Subjt:  WKSYRGQAEQQIPQTASQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACAAAGGATTTATGTCAGTATAGTACGTTATGTGCAAGGCATGGCACTCAACATAATGAACAGGTTAGTGAACTCTCTGAGATTAGAAGTTGTTTATCTGAGCT
AACCTCTATTATTCGAGAATTGGCTATTAGGAAATTGGACAATTTGGTGGCATGCAGAGTATGTTCGCTTCGAGGTCACACTTCTAAAGCATGTCCTCAGCTGTTGTGTG
GCCCTATGCGCAATGCTTGCACCTCATGGGAGTTTTCTAGCCCGTACCTCTCTTATGGTAATTCTCATGCATACCATTATGGATGGGAGGATCAACCTTGGAAGAGCTAT
AGAGGCCAAGCTGAGCAGCAGATTCCTCAAACTGCAAGCCAAGGCGCTGAGGACCCAAGAGCAAGCATCAGACGCTACCCTCCAGAATTTGACGCAGAAGATGCTGCGTG
CATGCAAGAGCGCCCAGGCACTTGCTTGGTGCTTCAGTTTCTCTCCCAAGCACTTAGGCACCCCGACCAGATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACAAAGGATTTATGTCAGTATAGTACGTTATGTGCAAGGCATGGCACTCAACATAATGAACAGGTTAGTGAACTCTCTGAGATTAGAAGTTGTTTATCTGAGCT
AACCTCTATTATTCGAGAATTGGCTATTAGGAAATTGGACAATTTGGTGGCATGCAGAGTATGTTCGCTTCGAGGTCACACTTCTAAAGCATGTCCTCAGCTGTTGTGTG
GCCCTATGCGCAATGCTTGCACCTCATGGGAGTTTTCTAGCCCGTACCTCTCTTATGGTAATTCTCATGCATACCATTATGGATGGGAGGATCAACCTTGGAAGAGCTAT
AGAGGCCAAGCTGAGCAGCAGATTCCTCAAACTGCAAGCCAAGGCGCTGAGGACCCAAGAGCAAGCATCAGACGCTACCCTCCAGAATTTGACGCAGAAGATGCTGCGTG
CATGCAAGAGCGCCCAGGCACTTGCTTGGTGCTTCAGTTTCTCTCCCAAGCACTTAGGCACCCCGACCAGATTTAA
Protein sequenceShow/hide protein sequence
MATKDLCQYSTLCARHGTQHNEQVSELSEIRSCLSELTSIIRELAIRKLDNLVACRVCSLRGHTSKACPQLLCGPMRNACTSWEFSSPYLSYGNSHAYHYGWEDQPWKSY
RGQAEQQIPQTASQGAEDPRASIRRYPPEFDAEDAACMQERPGTCLVLQFLSQALRHPDQI