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Clc04G00870 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00870
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionRING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Genome locationClcChr04:2638237..2638854
RNA-Seq ExpressionClc04G00870
SyntenyClc04G00870
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060071.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa]4.4e-2492.65Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR
        MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+R YPRFR+AFSRLFAS FRVSYSR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR

KAE8649764.1 hypothetical protein Csa_012384 [Cucumis sativus]6.1e-2694.29Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRNL
        MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+R YPRFR+AFSRLFASVFRVSYSRNL
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRNL

KAG6595630.1 hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2188.24Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR
        MLQLFFAVAFSAVPLTLYVPPIRSL+LFVETLE+LLR +A HTLRVYPRFR AFSRLFAS+FRVS SR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR

KAG6603254.1 hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia]9.2e-2284.06Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRN
        MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL RHTA HT R YPRFR+AFSR+F SVFRVSYSR+
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRN

KAG7037385.1 hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-2284.06Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRN
        MLQLFFAVAFSA PLT YVPPIRSL+LFVETLEDL RHTA HT R YPRFR+AFSR+F SVFRVSYSR+
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRN

TrEMBL top hitse value%identityAlignment
A0A0A0KZF7 Uncharacterized protein3.0e-2694.29Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRNL
        MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+R YPRFR+AFSRLFASVFRVSYSRNL
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRNL

A0A0D2MES3 Uncharacterized protein1.0e-1878.46Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS
        MLQLFF VAFSAVPLTLYVPPIRSLSLFVET+ED+LR T ++TLRVYPR R+ FSR+F S+FR+S
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS

A0A5A7V2T5 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 12.1e-2492.65Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR
        MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLL HTAIHT+R YPRFR+AFSRLFAS FRVSYSR
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSR

A0A5D2RVA8 Uncharacterized protein1.0e-1878.46Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS
        MLQLFF VAFSAVPLTLYVPPIRSLSLFVET+ED+LR T ++TLRVYPR R+ FSR+F S+FR+S
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS

A0A5J5SU59 Uncharacterized protein1.0e-1878.46Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS
        MLQLFF VAFSAVPLTLYVPPIRSLSLFVET+ED+LR T ++TLRVYPR R+ FSR+F S+FR+S
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52105.1 unknown protein6.3e-1353.85Show/hide
Query:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS
        MLQLFF +AFSA PLTLY+PPIR L++FVET+E++     +++ R++PR R+A+SRL    F  S
Subjt:  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGTGCCATTGACGCTCTATGTGCCGCCGATTCGAAGCCTCAGTCTGTTCGTTGAAACCCTAGAAGATCTTCTCCG
TCACACCGCCATTCATACGCTCAGAGTTTATCCTCGCTTCCGCGTTGCCTTCTCTCGCCTGTTCGCCTCTGTATTCCGCGTTTCTTATTCCAGGAATCTTGAATATTGA
mRNA sequenceShow/hide mRNA sequence
AAATAGAAGAAATGATAAGGATCACTAAGTCTACCAAACGTCGCTTAAATTACAAAACTAATCCATTGACCTTTTTATTTAAACAAAACTAGAGCAGGAAATCCCTTCCA
ATGGGCTCTCATAATTCCTTCAATTTTCCTCTTCAATTTTCCCACTGATTTCAATTCGGATAAACACATAGGTTTTTCCTTCCTTATCTTCTCCCCCTCAATCTTCATAT
TAATCCAATCCTTCCCTCAAAATTCCGTCAAATTCTTCGCACTTGTTCATCTCTCAGCCAACCAAAGCTCCAATGCTTCAGCTGTTCTTCGCCGTCGCTTTCTCGGCCGT
GCCATTGACGCTCTATGTGCCGCCGATTCGAAGCCTCAGTCTGTTCGTTGAAACCCTAGAAGATCTTCTCCGTCACACCGCCATTCATACGCTCAGAGTTTATCCTCGCT
TCCGCGTTGCCTTCTCTCGCCTGTTCGCCTCTGTATTCCGCGTTTCTTATTCCAGGAATCTTGAATATTGA
Protein sequenceShow/hide protein sequence
MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLRHTAIHTLRVYPRFRVAFSRLFASVFRVSYSRNLEY