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Clc04G00920 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G00920
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationClcChr04:2691107..2693295
RNA-Seq ExpressionClc04G00920
SyntenyClc04G00920
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031952.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]8.5e-1132.74Show/hide
Query:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMT----WVFEL-LLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIF
        P   RL R       E+E  K+ D  L + Y  K +Q IF    ++    W  +   + S++     + +   K Q KENLC F+P+ IEI D   GNIF
Subjt:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMT----WVFEL-LLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIF

Query:  LNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF
        LNFG     +PP+ + G L T++F+  L++  L QVM DE +  +          P  ++P   RNP+
Subjt:  LNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF

KAA0047189.1 hypothetical protein E6C27_scaffold83G00690 [Cucumis melo var. makuwa]7.2e-1046.07Show/hide
Query:  LLLKSLELILGL-EIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD
        L +K+L  I G  E  +  + QVK NLC F+PS IEI D  RGNIFLNFGDFE ++PP     +++ +DF K ++L  + +V+ DE  D
Subjt:  LLLKSLELILGL-EIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD

TYK16775.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.2e-1133.88Show/hide
Query:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMTWVFELLLKSLEL----------ILGLEIIAF----------GKNQVKENLCRFM
        P   RL R       E+E  K+ D  L + Y  K +Q IF    ++   +  LKS  +            GLE IAF           K Q KENLC F+
Subjt:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMTWVFELLLKSLEL----------ILGLEIIAF----------GKNQVKENLCRFM

Query:  PSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF
        P+ IEI D   GNIFLNFG     +PP+ + G L T++F+  L++  L QVM DE +  +          P  ++P   RNP+
Subjt:  PSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF

TYK28792.1 pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa]6.1e-0950.75Show/hide
Query:  KNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDE
        K Q+K NLC FMP+ IEI D  RG  FLN+GD E + P   ++G LL  DF  P++L  + QVM DE
Subjt:  KNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDE

XP_038904899.1 uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]2.1e-0938.05Show/hide
Query:  LLLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISD-SHLF
        + ++ L LI  L+ I     +VKENLC F+P+ IE+ +  RG+I+LNFGD  + +PP+ ++G L  +DFT P++L  L +V   E +   P  S  + LF
Subjt:  LLLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISD-SHLF

Query:  DPLQNLPRFSRNP
           +N+ + SR+P
Subjt:  DPLQNLPRFSRNP

TrEMBL top hitse value%identityAlignment
A0A5A7SLN9 Retrotransposable element Tf24.1e-1132.74Show/hide
Query:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMT----WVFEL-LLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIF
        P   RL R       E+E  K+ D  L + Y  K +Q IF    ++    W  +   + S++     + +   K Q KENLC F+P+ IEI D   GNIF
Subjt:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMT----WVFEL-LLKSLELILGLEIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIF

Query:  LNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF
        LNFG     +PP+ + G L T++F+  L++  L QVM DE +  +          P  ++P   RNP+
Subjt:  LNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF

A0A5A7U128 Uncharacterized protein3.5e-1046.07Show/hide
Query:  LLLKSLELILGL-EIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD
        L +K+L  I G  E  +  + QVK NLC F+PS IEI D  RGNIFLNFGDFE ++PP     +++ +DF K ++L  + +V+ DE  D
Subjt:  LLLKSLELILGL-EIIAFGKNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD

A0A5A7U6A9 Uncharacterized protein2.5e-0841.84Show/hide
Query:  QVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD-----SIPQISDSHLFDPLQNLPRFSRNPF
        QVK+NLC F+P  IEI D  R NI+L+FGDFE ++P    +   L +DF   ++   +R V+LDE +D     SIP++  S        LPR  RNP+
Subjt:  QVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVD-----SIPQISDSHLFDPLQNLPRFSRNPF

A0A5D3CZ35 DNA/RNA polymerases superfamily protein1.1e-1133.88Show/hide
Query:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMTWVFELLLKSLEL----------ILGLEIIAF----------GKNQVKENLCRFM
        P   RL R       E+E  K+ D  L + Y  K +Q IF    ++   +  LKS  +            GLE IAF           K Q KENLC F+
Subjt:  PPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMTWVFELLLKSLEL----------ILGLEIIAF----------GKNQVKENLCRFM

Query:  PSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF
        P+ IEI D   GNIFLNFG     +PP+ + G L T++F+  L++  L QVM DE +  +          P  ++P   RNP+
Subjt:  PSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPF

A0A5D3DYX0 Pseudouridylate synthase 7-like protein isoform X13.0e-0950.75Show/hide
Query:  KNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDE
        K Q+K NLC FMP+ IEI D  RG  FLN+GD E + P   ++G LL  DF  P++L  + QVM DE
Subjt:  KNQVKENLCRFMPSAIEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACCCTCTTTTCTTCTCCTTCATCTCTTCTCTTTCATTCTACCCCCTTTATCGTTGGTGCCCCTGCCAAGTTCTCCCCCCACCAGCACGCTTACTTCGAAAAGT
TATATCCGACATTATGGAAATTGAAAGCTGCAAAATCAACGATTCCTTCCTTTGCATCTGCTATGCTAAGAAGTGCTGGCAGCGAATATTTCACCTGTTCAACATGACTT
GGGTTTTTGAGCTACTTTTGAAGTCATTGGAGCTTATTTTGGGGCTGGAAATTATTGCATTTGGCAAAAATCAAGTAAAGGAGAATTTGTGTAGATTCATGCCTTCGGCT
ATTGAGATTAAAGATGCAGTTCGTGGTAATATCTTTCTAAATTTTGGAGATTTTGAGTCAATTGACCCGCCAACAGTCATTCGAGGCAGTTTATTGACCAATGATTTTAC
CAAACCCCTTAATTTGTTTTGTTTAAGACAAGTGATGCTAGATGAATGTGTAGATTCCATCCCTCAGATTTCGGATTCTCATCTCTTTGATCCTTTACAAAATCTTCCAA
GGTTCTCAAGGAATCCTTTTAATTCATTTTCAGAAGAAGAAGCTCAATTCTCGAAGTTAGTCCAACTGAAAGATATAAAAGAGAAAATGGATGATCCATTGTTAGTTTCG
TGCAAAGAGATTTCGGTGAAATCCTCATCTGTAATTGCAAGGAGCGATTCGGAGGTTGAAGCTACTAGTGTGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAACCCTCTTTTCTTCTCCTTCATCTCTTCTCTTTCATTCTACCCCCTTTATCGTTGGTGCCCCTGCCAAGTTCTCCCCCCACCAGCACGCTTACTTCGAAAAGT
TATATCCGACATTATGGAAATTGAAAGCTGCAAAATCAACGATTCCTTCCTTTGCATCTGCTATGCTAAGAAGTGCTGGCAGCGAATATTTCACCTGTTCAACATGACTT
GGGTTTTTGAGCTACTTTTGAAGTCATTGGAGCTTATTTTGGGGCTGGAAATTATTGCATTTGGCAAAAATCAAGTAAAGGAGAATTTGTGTAGATTCATGCCTTCGGCT
ATTGAGATTAAAGATGCAGTTCGTGGTAATATCTTTCTAAATTTTGGAGATTTTGAGTCAATTGACCCGCCAACAGTCATTCGAGGCAGTTTATTGACCAATGATTTTAC
CAAACCCCTTAATTTGTTTTGTTTAAGACAAGTGATGCTAGATGAATGTGTAGATTCCATCCCTCAGATTTCGGATTCTCATCTCTTTGATCCTTTACAAAATCTTCCAA
GGTTCTCAAGGAATCCTTTTAATTCATTTTCAGAAGAAGAAGCTCAATTCTCGAAGTTAGTCCAACTGAAAGATATAAAAGAGAAAATGGATGATCCATTGTTAGTTTCG
TGCAAAGAGATTTCGGTGAAATCCTCATCTGTAATTGCAAGGAGCGATTCGGAGGTTGAAGCTACTAGTGTGAACTAG
Protein sequenceShow/hide protein sequence
MVNPLFFSFISSLSFYPLYRWCPCQVLPPPARLLRKVISDIMEIESCKINDSFLCICYAKKCWQRIFHLFNMTWVFELLLKSLELILGLEIIAFGKNQVKENLCRFMPSA
IEIKDAVRGNIFLNFGDFESIDPPTVIRGSLLTNDFTKPLNLFCLRQVMLDECVDSIPQISDSHLFDPLQNLPRFSRNPFNSFSEEEAQFSKLVQLKDIKEKMDDPLLVS
CKEISVKSSSVIARSDSEVEATSVN