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Clc04G01010 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01010
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
Genome locationClcChr04:2942341..2945039
RNA-Seq ExpressionClc04G01010
SyntenyClc04G01010
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_038877203.1 uncharacterized protein LOC120069501 [Benincasa hispida]4.7e-0939Show/hide
Query:  SVKTIQANPKKKYRIKRFKALSATMFEGT---ADAED-------------------VRVGYVHAPEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP
        S++ IQ +P+KKY I+R KAL AT FEGT   ADAE+                   V +      +  EDWW+L++NRKGD E + W +F+K+  +++YP
Subjt:  SVKTIQANPKKKYRIKRFKALSATMFEGT---ADAED-------------------VRVGYVHAPEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP

XP_038877572.1 uncharacterized protein LOC120069826 [Benincasa hispida]2.3e-1142.53Show/hide
Query:  VITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRVGYVH-----APEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYPS
        ++T V +IQ +P+KK+ ++R KAL AT F+G  D EDV    V        +G   WW++I  R+ + EA++W +FRK  +DKYYPS
Subjt:  VITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRVGYVH-----APEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYPS

XP_038883959.1 uncharacterized protein LOC120074858 [Benincasa hispida]4.3e-1035.51Show/hide
Query:  SSEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAP-------------EGDEDWWRLIENRKGDAEALTWTDFRKAL
        +  + TSV++IQ +P KK+ ++R KALSATM +G  D  D +V           +  P             +G E WW++I  ++  +EA+TW +FR+  
Subjt:  SSEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAP-------------EGDEDWWRLIENRKGDAEALTWTDFRKAL

Query:  QDKYYPS
         DKYYPS
Subjt:  QDKYYPS

XP_038895853.1 uncharacterized protein LOC120084022 [Benincasa hispida]1.2e-0938.61Show/hide
Query:  SVKTIQANPKKKYRIKRFKALSATMFEGTADA--------------------EDVRVGYVH--APEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP
        SV +++ANP+KKY I+RFKAL A  F+GT ++                    ED +VG       +  E WW++I  R+   +A+ W +FRKA +DKYYP
Subjt:  SVKTIQANPKKKYRIKRFKALSATMFEGTADA--------------------EDVRVGYVH--APEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP

Query:  S
        S
Subjt:  S

XP_038895929.1 uncharacterized protein LOC120084100 [Benincasa hispida]3.9e-1141Show/hide
Query:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPEG-------------DEDWWRLIENRKGDAEALTWTDFRKALQDKYYP
        S+  IQ +P+KKY I+R KAL AT FEGT D  D +V         G +  PE               EDWW+L++NR+GD E + W +FRKA  +++YP
Subjt:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPEG-------------DEDWWRLIENRKGDAEALTWTDFRKALQDKYYP

TrEMBL top hitse value%identityAlignment
A0A5A7TBS0 CCHC-type domain-containing protein1.3e-0737Show/hide
Query:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP
        S ++ Q++PKKKY I+R KAL AT F GT +  DV                PE             G EDWWR+ E+R+     ++W +F+KA  DK+YP
Subjt:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP

A0A5A7UZM6 Gag protease polyprotein-like protein5.6e-0834.71Show/hide
Query:  GRPYIHQDS-------SEVITSVKTIQANPKKKYRIKRFKALSATMFEGT---ADAE-------------------DVRVGYVHAPEGDEDWWRLIENRK
        GRP  H D+          + S ++ Q++P+KKY I+R KAL AT F GT   ADAE                    V +       G EDWWR+ E+R+
Subjt:  GRPYIHQDS-------SEVITSVKTIQANPKKKYRIKRFKALSATMFEGT---ADAE-------------------DVRVGYVHAPEGDEDWWRLIENRK

Query:  GDAEALTWTDFRKALQDKYYP
             ++W +F+KA  DK+YP
Subjt:  GDAEALTWTDFRKALQDKYYP

A0A5A7V8M7 Putative Retrotransposon protein1.6e-0733.04Show/hide
Query:  GRPYIHQDSSEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAED----------------------VRVGYVHAPEGDEDWWRLIENRKGDAEALT
        G     + + E+  S +    +P+K YRI+R K L AT+FEG+ D+ D                      VR+      +  E WW+ I  R+ DA AL 
Subjt:  GRPYIHQDSSEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAED----------------------VRVGYVHAPEGDEDWWRLIENRKGDAEALT

Query:  WTDFRKALQDKYYPS
        W  FR   +DKYYPS
Subjt:  WTDFRKALQDKYYPS

A0A5D3CTK6 CCHC-type domain-containing protein1.3e-0737Show/hide
Query:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP
        S ++ Q++PKKKY I+R KAL AT F GT +  DV                PE             G EDWWR+ E+R+     ++W +F+KA  DK+YP
Subjt:  SVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRKGDAEALTWTDFRKALQDKYYP

A0A5D3DI38 Reverse transcriptase3.7e-0731.4Show/hide
Query:  GRPYIHQDS-------SEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRK
        GRP  H D+          +  +++ Q+NP+KKY I R KAL AT F GT +  D                 PE             G E WW + E+R+
Subjt:  GRPYIHQDS-------SEVITSVKTIQANPKKKYRIKRFKALSATMFEGTADAEDVRV---------GYVHAPE-------------GDEDWWRLIENRK

Query:  GDAEALTWTDFRKALQDKYYP
             ++W +F+KA  DK+YP
Subjt:  GDAEALTWTDFRKALQDKYYP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCGATGTGCTTCCATCTTCCATCAATATGGAACTAACTCCAGAGCCGCTCATCCAAACTCGCGACGAGACCCCTACTTCTAAGGTCATGGCCCAAGGCCCCAC
ATGGCCCCCACCGGGCTTGTCATTGACATTGCAAATGGCAGCAATGCTCGTCTTCTTGCTTGTTGTTCAGCTTGACATGCTTGCCCACTTATCTTGGTGTAAATATGGAA
GACCATATATTCACCAAGATAGCTCAGAGGTTATTACCAGTGTTAAGACTATTCAAGCGAATCCTAAGAAGAAGTACAGGATCAAGAGATTTAAAGCTTTGAGTGCCACA
ATGTTCGAGGGTACTGCTGATGCAGAAGATGTTAGAGTTGGATATGTTCATGCTCCAGAAGGGGACGAGGATTGGTGGAGACTGATTGAGAATAGGAAAGGAGATGCAGA
GGCTTTGACATGGACTGATTTTAGGAAGGCTCTCCAGGATAAGTATTATCCTAGTCTTCTTTTTCCAAGAGATCTTCCTTCCTATGACTCTGGCAAGGATCCGGTTTGTG
GGAACCACTTCTTGAAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCGATGTGCTTCCATCTTCCATCAATATGGAACTAACTCCAGAGCCGCTCATCCAAACTCGCGACGAGACCCCTACTTCTAAGGTCATGGCCCAAGGCCCCAC
ATGGCCCCCACCGGGCTTGTCATTGACATTGCAAATGGCAGCAATGCTCGTCTTCTTGCTTGTTGTTCAGCTTGACATGCTTGCCCACTTATCTTGGTGTAAATATGGAA
GACCATATATTCACCAAGATAGCTCAGAGGTTATTACCAGTGTTAAGACTATTCAAGCGAATCCTAAGAAGAAGTACAGGATCAAGAGATTTAAAGCTTTGAGTGCCACA
ATGTTCGAGGGTACTGCTGATGCAGAAGATGTTAGAGTTGGATATGTTCATGCTCCAGAAGGGGACGAGGATTGGTGGAGACTGATTGAGAATAGGAAAGGAGATGCAGA
GGCTTTGACATGGACTGATTTTAGGAAGGCTCTCCAGGATAAGTATTATCCTAGTCTTCTTTTTCCAAGAGATCTTCCTTCCTATGACTCTGGCAAGGATCCGGTTTGTG
GGAACCACTTCTTGAAAGAATAG
Protein sequenceShow/hide protein sequence
MEFDVLPSSINMELTPEPLIQTRDETPTSKVMAQGPTWPPPGLSLTLQMAAMLVFLLVVQLDMLAHLSWCKYGRPYIHQDSSEVITSVKTIQANPKKKYRIKRFKALSAT
MFEGTADAEDVRVGYVHAPEGDEDWWRLIENRKGDAEALTWTDFRKALQDKYYPSLLFPRDLPSYDSGKDPVCGNHFLKE