CuGenDBv2

Gene ID	Clc04G01050
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr04:2967292..2971166
RNA-Seq Expression	Clc04G01050
Synteny	Clc04G01050
Gene Ontology terms	GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

3.0e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

1.5e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

A0A5A7TWB9 Gag/pol protein

1.5e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

A0A5D3BHG7 Gag/pol protein

1.5e-58

48.62

Show/hide

Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

A0A5D3CPJ6 Gag/pol protein

1.5e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

A0A5D3CSZ6 Gag/pol protein

1.5e-58

48.62

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Query:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------
        V+  GCKWIYKRKRG DGKVQTFKARLVAKGYT                                                                   
Subjt:  VEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYT-------------------------------------------------------------------

Query:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN
                     Q S+SWNIRFDTAIK Y FDQ VD+PCVYK+IIN S+AFLVLY+DDILLIGND                              I R+
Subjt:  -------------QTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGND------------------------------IIRN

Query:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS
        RKNK  ALSQASYIDK++V+YSM NSKR LLPFRHG+ L+K+QC KT Q+V+EMR IPYA AV SLMY +LCTR DICYAV IVSRYQS+
Subjt:  RKNKTSALSQASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSS

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.6e-06

26.11

Show/hide

Query:  GYTQTSQSWNIRFDTAIKVYDFDQNVDKPCVY---KKIINNSIAFLVLYMDDILLIGNDIIRNRKNKTSA----------------------------LS
        G  Q ++ W   F+ A+K  +F  +    C+Y   K  IN +I +++LY+DD+++   D+ R    K                               LS
Subjt:  GYTQTSQSWNIRFDTAIKVYDFDQNVDKPCVY---KKIINNSIAFLVLYMDDILLIGNDIIRNRKNKTSA----------------------------LS

Query:  QASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQS
        Q++Y+ K+L +++M N      P    I     + L + ++       P    +  LMY++LCTR D+  AV I+SRY S
Subjt:  QASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-20

33.15

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Query:  GYTQTSQSWNIRFDTAIKVYDFDQNVDKPCVY-KKIINNSIAFLVLYMDDILLIGND------------------------------IIRNRKNKTSALS
        G  Q  + W ++FD+ +K   + +    PCVY K+   N+   L+LY+DD+L++G D                              I+R R ++   LS
Subjt:  GYTQTSQSWNIRFDTAIKVYDFDQNVDKPCVY-KKIINNSIAFLVLYMDDILLIGND------------------------------IIRNRKNKTSALS

Query:  QASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRY
        Q  YI+++L R++M N+K    P    + L+KK C  T +E   M  +PY+ AV SLMY ++CTR DI +AV +VSR+
Subjt:  QASYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRY

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

6.3e-06

66.67

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Query:  GCKWIYKRKRGVDGKVQTFKARLVAKGYTQ
        GCKW+YK K   DG ++ +KARLVAKGYTQ
Subjt:  GCKWIYKRKRGVDGKVQTFKARLVAKGYTQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTAGAAACAAGGCAACGCAATCAAGAGCGTCACTGCGCTCCCCTCGACGCTCTCGACCCGAGAGCATCAAATTTTGGAGGTTGCATGAGCGTCACGTCACTGAAGTT
TAGCGTCATCGCATCACTGCGTTTGAGGTTAGGTTTTGATGACAGACAGCATTGCGACACTGCCTATATGATGATGGACAATGTCGTTGCGCTCTCCAAGAGCGCAGAGA
CAAGAGAGAGACACAAAGGAAACACACAAAAACACATCAAGAATATGAGAATTGGAGACCGAGAGCAAGAGTTTACTGCAAGGTCAATCGTGTTAAATGAACTTTCCAAT
GAAACTACTGAAACTTCAACAAGAGTTGTTGAAGAAGCTGGTTGCAAATGGATCTACAAGAGGAAAAGAGGTGTAGATGGTAAGGTGCAAACCTTTAAGGCTAGACTAGT
GGCAAAGGGTTATACCCAGACATCTCAATCTTGGAATATAAGATTTGATACTGCGATCAAGGTTTACGACTTTGACCAAAATGTTGATAAACCTTGTGTCTACAAGAAAA
TCATCAACAATTCAATAGCTTTCTTAGTGTTGTATATGGATGATATCCTTCTCATTGGGAATGATATCATAAGGAATCGTAAAAACAAAACGTCAGCCTTGTCTCAAGCA
TCGTATATTGACAAGATGCTTGTCAGGTATTCAATGCACAATTCCAAGAGGGACTTATTACCTTTTCGGCATGGAATTGTATTGACTAAGAAACAGTGTCTCAAGACTTC
TCAAGAGGTTAAAGAAATGAGATGGATTCCCTATGCATTGGCTGTAAGCAGCCTTATGTATGTTGTGTTGTGTACAAGGCTTGACATTTGCTATGCAGTTGAGATTGTTA
GTAGATATCAGTCTTCCAGGATTTGA

mRNA sequence

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Protein sequence

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MLETRQRNQERHCAPLDALDPRASNFGGCMSVTSLKFSVIASLRLRLGFDDRQHCDTAYMMMDNVVALSKSAETRERHKGNTQKHIKNMRIGDREQEFTARSIVLNELSN
ETTETSTRVVEEAGCKWIYKRKRGVDGKVQTFKARLVAKGYTQTSQSWNIRFDTAIKVYDFDQNVDKPCVYKKIINNSIAFLVLYMDDILLIGNDIIRNRKNKTSALSQA
SYIDKMLVRYSMHNSKRDLLPFRHGIVLTKKQCLKTSQEVKEMRWIPYALAVSSLMYVVLCTRLDICYAVEIVSRYQSSRI

Clc04G01050 (gene) of Watermelon (cordophanus) v2 genome