CuGenDBv2

Gene ID	Clc04G01060
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr04:2971222..2971587
RNA-Seq Expression	Clc04G01060
Synteny	Clc04G01060
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-46

79.49

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-46

79.49

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Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

KAA0043328.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-45

78.63

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA YV ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

4.0e-46

79.49

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

TYK17670.1 gag/pol protein [Cucumis melo var. makuwa]

2.0e-45

78.63

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Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA YV ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKJ4 Gag/pol protein

9.7e-46

78.63

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA YV ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

A0A5A7TKM4 Gag/pol protein

1.9e-46

79.49

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

A0A5A7TZD0 Gag/pol protein

1.9e-46

79.49

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

A0A5A7UYE8 Gag/pol protein

1.9e-46

79.49

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKDSRKST GSVFT NGG VVW+SIKQGCIADSTMEA YVAACEA KE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

A0A5D3D214 Gag/pol protein

9.7e-46

78.63

Show/hide

Query:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV
        MLV+GAKDLIL GYTDSDFQ DKD RKST GSVFT NGG VVW+SIKQGCIADSTMEA YV ACEATKE VWLRKFL DLE++PN+++PITLYCDNSG V
Subjt:  MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVV

Query:  ANSKEPKSHTNVESILR
        ANSKEP+SH   + I R
Subjt:  ANSKEPKSHTNVESILR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.3e-12

35.85

Show/hide

Query:  LIGYTDSDFQIDKDSRKSTLGSVF-TFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSH
        +IGY DSD+   +  RKST G +F  F+  ++ W + +Q  +A S+ EA Y+A  EA +E +WL+  LT + I   +  PI +Y DN G ++ +  P  H
Subjt:  LIGYTDSDFQIDKDSRKSTLGSVF-TFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSH

Query:  TNVESI
           + I
Subjt:  TNVESI

P0CV72 Secreted RxLR effector protein 161

2.2e-10

50.79

Show/hide

Query:  LIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWL
        L+GY+D+D+  D +SR+ST G +F  NGG V W+S KQ  +A S+ E  Y+A  EAT+E VWL
Subjt:  LIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.7e-20

43.86

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Query:  LVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVA
        L FG  D IL GYTD+D   D D+RKS+ G +FTF+GG + WQS  Q C+A ST EA Y+AA E  KE++WL++FL +L +         +YCD+   + 
Subjt:  LVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVA

Query:  NSKEPKSHTNVESI
         SK    H   + I
Subjt:  NSKEPKSHTNVESI

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

7.6e-11

32.35

Show/hide

Query:  YTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVE
        ++D+ FQ  KD+R+ST G        ++ W+S KQ  ++ S+ EA Y A   AT E++WL +F  +L++   +S P  L+CDN+  +  +     H   +
Subjt:  YTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHTNVE

Query:  SI
         I
Subjt:  SI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTGTGTTTGGGGCTAAGGATTTGATCCTTATAGGATACACAGACTCTGATTTTCAGATTGATAAGGATTCTAGAAAATCCACATTAGGATCAGTATTCACTTTTAA
CGGCGGGGTTGTAGTTTGGCAGAGCATAAAGCAAGGTTGCATTGCTGACTCTACCATGGAGGCGGGGTATGTAGCTGCTTGTGAAGCTACTAAGGAGGTTGTTTGGCTTA
GGAAGTTTTTGACAGACCTGGAAATTATTCCTAACATATCGATGCCCATCACCCTTTATTGTGATAATAGTGGTGTTGTGGCAAATTCCAAGGAGCCTAAAAGCCACACA
AACGTGGAAAGCATATTGAGGGCAAGTATCATTTGA

mRNA sequence

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Protein sequence

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MLVFGAKDLILIGYTDSDFQIDKDSRKSTLGSVFTFNGGVVVWQSIKQGCIADSTMEAGYVAACEATKEVVWLRKFLTDLEIIPNISMPITLYCDNSGVVANSKEPKSHT
NVESILRASII

Clc04G01060 (gene) of Watermelon (cordophanus) v2 genome