CuGenDBv2

Gene ID	Clc04G01160
Organism	Citrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Genome location	ClcChr04:3240952..3241344
RNA-Seq Expression	Clc04G01160
Synteny	Clc04G01160
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-53

83.72

Show/hide

Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

KAA0040406.1 gag/pol protein [Cucumis melo var. makuwa]

1.1e-52

82.95

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY TKDLIL  YTDS+FQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IR+IV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-53

83.72

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

3.7e-53

83.72

Show/hide

Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-54

84.5

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLNEGA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TE91 Gag/pol protein

5.1e-53

82.95

Show/hide

Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY TKDLIL  YTDS+FQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IR+IV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

A0A5A7TKM4 Gag/pol protein

1.8e-53

83.72

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

A0A5A7TZD0 Gag/pol protein

1.8e-53

83.72

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

A0A5A7UYE8 Gag/pol protein

1.8e-53

83.72

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLN GA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

A0A5A7V1F5 Gag/pol protein

2.7e-54

84.5

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Query:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS
        RDYMLVY  KDLIL  YTDSDFQTD DSRK TSG VFTLNEGA+VWRSIKQGCI DST+EAEYVAAC AA EAVWL+K L +LEVVPNM+LPITLYCDNS
Subjt:  RDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNS

Query:  DVVANSKEPRSHKRGKHIERKYHIIREIV
          VANSKEPRSHKRGKHIERKYH+IREIV
Subjt:  DVVANSKEPRSHKRGKHIERKYHIIREIV

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

9.1e-15

38.46

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Query:  LIRYTDSDFQTDIDSRKFTSGLVFTLNE-GAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSH
        +I Y DSD+      RK T+G +F + +   I W + +Q  +  S+ EAEY+A   A  EA+WLK LL ++ +   +  PI +Y DN   ++ +  P  H
Subjt:  LIRYTDSDFQTDIDSRKFTSGLVFTLNE-GAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSH

Query:  KRGKHIERKYHIIREIV
        KR KHI+ KYH  RE V
Subjt:  KRGKHIERKYHIIREIV

P0CV72 Secreted RxLR effector protein 161

2.6e-09

47.62

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Query:  LIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWL
        L+ Y+D+D+  D++SR+ TSG +F LN G + WRS KQ  +  S+ E EY+A   A  EAVWL
Subjt:  LIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.5e-20

42.4

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Query:  LVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVA
        L +   D IL  YTD+D   DID+RK ++G +FT + GAI W+S  Q C+  ST EAEY+AA     E +WLK+ L  L +    ++   +YCD+   + 
Subjt:  LVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVA

Query:  NSKEPRSHKRGKHIERKYHIIREIV
         SK    H R KHI+ +YH IRE+V
Subjt:  NSKEPRSHKRGKHIERKYHIIREIV

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.5e-12

34.23

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Query:  YTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGK
        ++D+ FQ+  D+R+ T+G    L    I W+S KQ  +  S+ EAEY A   A +E +WL +    L++   +  P  L+CDN+  +  +     H+R K
Subjt:  YTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEPRSHKRGK

Query:  HIERKYHIIRE
        HIE   H +RE
Subjt:  HIERKYHIIRE

Sequences

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CDS sequence

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ATGAGGGATTATATGCTCGTGTATGACACTAAGGATCTAATCCTTATAAGATACACTGACTCTGATTTTCAAACTGATATAGATTCGAGGAAATTTACATCAGGATTAGT
GTTCACTCTAAATGAAGGAGCAATAGTTTGGAGGAGTATCAAACAAGGTTGTATAGTTGACTCCACCTTGGAAGCTGAGTACGTAGCTGCATGTTTAGCAGCAAATGAAG
CAGTATGGCTCAAGAAGCTCTTAGCAAATCTGGAAGTTGTTCCAAATATGCATTTGCCTATCACTCTCTATTGTGATAATAGTGATGTAGTTGCAAATTCCAAAGAACCT
AGAAGCCATAAGCGCGGCAAACACATTGAACGCAAATATCATATCATTAGAGAAATTGTGTAG

mRNA sequence

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Protein sequence

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MRDYMLVYDTKDLILIRYTDSDFQTDIDSRKFTSGLVFTLNEGAIVWRSIKQGCIVDSTLEAEYVAACLAANEAVWLKKLLANLEVVPNMHLPITLYCDNSDVVANSKEP
RSHKRGKHIERKYHIIREIV

Clc04G01160 (gene) of Watermelon (cordophanus) v2 genome