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Clc04G01180 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01180
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
Genome locationClcChr04:3291797..3293242
RNA-Seq ExpressionClc04G01180
SyntenyClc04G01180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137641.1 pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus]5.1e-0441.41Show/hide
Query:  SRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANSLMLNVVFF
        SRQ+FDE STRS VISWNSMIAA SR                                           G    GC+TKFQLHDDTPV NSL+   V F
Subjt:  SRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANSLMLNVVFF
XP_038893873.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida]1.6e-0541.67Show/hide
Query:  CTPSAHFPTSRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANS
        C+  +   +SRQ+FDEMSTRS VISWNSMIAA SR                                           G    GCITKFQL DDTPVANS
Subjt:  CTPSAHFPTSRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANS

Query:  LMLNVVFF
        LM   V F
Subjt:  LMLNVVFF
TrEMBL top hitse value%identityAlignment
A0A0A0LT91 Uncharacterized protein2.5e-0441.41Show/hide
Query:  SRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANSLMLNVVFF
        SRQ+FDE STRS VISWNSMIAA SR                                           G    GC+TKFQLHDDTPV NSL+   V F
Subjt:  SRQLFDEMSTRSVVISWNSMIAACSR-------------------------------------------GAFGTGCITKFQLHDDTPVANSLMLNVVFF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAAAACCTTTGTCTTAAAACCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGTGCCGCCCTTCTTCCTTGTACCATCATCCGCCA
AATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGA
TGGCACAATGCTCCACGCTCACCTCATCTGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGC
CAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTGTTCTCGTGGAGCTTTTGGTACAGGTTGCATTACCAAGTTTCAACT
TCATGATGACACGCCGGTGGCAAATTCTCTTATGCTAAATGTAGTGTTCTTTTCCTTCTTCCTTGTCAGCCAATCCTTTTCAAATACCTTATTTGAAGGGAGTGGAAAGT
GCCTGTTGCAAGCCTTCTCCAAGCAAGCCTGCTGTAAGCAGGGTATCCTATTCACGTGGGACACAAGCCAGGTTCTAGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAAAACCTTTGTCTTAAAACCCTCTTCTCCTTTGAAACCCACATTGTTCATCTAAGGCTACTTCACATTCGTGCCGCCCTTCTTCCTTGTACCATCATCCGCCA
AATCTCGCCTTATCGTTCGTCCGTTGTAGTAGCACCAATTCGTCCGCCATTTGTGGAAGCCGTCGTTCATCCGCTGGTCGTGCCTCTGTCGTTCGTTCGCTGGTCGACGA
TGGCACAATGCTCCACGCTCACCTCATCTGTGTCGGGTTCGAATCAGACATATTTGTTCAAACCTCACTCGTCGACATGTACTCCAAGTGCTCACTTTCCTACTTCACGC
CAACTGTTCGACGAAATGTCTACAAGAAGTGTCGTCATCTCTTGGAATTCTATGATTGCCGCTTGTTCTCGTGGAGCTTTTGGTACAGGTTGCATTACCAAGTTTCAACT
TCATGATGACACGCCGGTGGCAAATTCTCTTATGCTAAATGTAGTGTTCTTTTCCTTCTTCCTTGTCAGCCAATCCTTTTCAAATACCTTATTTGAAGGGAGTGGAAAGT
GCCTGTTGCAAGCCTTCTCCAAGCAAGCCTGCTGTAAGCAGGGTATCCTATTCACGTGGGACACAAGCCAGGTTCTAGAGTAA
Protein sequenceShow/hide protein sequence
MSKNLCLKTLFSFETHIVHLRLLHIRAALLPCTIIRQISPYRSSVVVAPIRPPFVEAVVHPLVVPLSFVRWSTMAQCSTLTSSVSGSNQTYLFKPHSSTCTPSAHFPTSR
QLFDEMSTRSVVISWNSMIAACSRGAFGTGCITKFQLHDDTPVANSLMLNVVFFSFFLVSQSFSNTLFEGSGKCLLQAFSKQACCKQGILFTWDTSQVLE