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Clc04G01500 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01500
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMitochondrial ribosomal protein L37
Genome locationClcChr04:4495763..4496167
RNA-Seq ExpressionClc04G01500
SyntenyClc04G01500
Gene Ontology termsGO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR013870 - Ribosomal protein L37, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8649745.1 hypothetical protein Csa_012025 [Cucumis sativus]7.8e-5992.37Show/hide
Query:  MSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK
        MSQIRLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK

Query:  NVESLPYADLKRFVKLDTRARIKENNSIKAK
        N ESLPYADLKRF+KLDTRARIKENNSIKAK
Subjt:  NVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_008442187.1 PREDICTED: 54S ribosomal protein L37, mitochondrial isoform X2 [Cucumis melo]1.4e-6092.48Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_016899597.1 PREDICTED: 39S ribosomal protein L54, mitochondrial isoform X1 [Cucumis melo]1.4e-6092.48Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

XP_038883606.1 39S ribosomal protein L54, mitochondrial isoform X1 [Benincasa hispida]1.6e-5994.03Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRSI VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        RKNVE+LPY DLKRFVKLDTRA+IKENNS KAKN
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

XP_038883607.1 54S ribosomal protein L37, mitochondrial isoform X2 [Benincasa hispida]1.6e-5994.03Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRSI VN+KDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKAS LSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        RKNVE+LPY DLKRFVKLDTRA+IKENNS KAKN
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

TrEMBL top hitse value%identityAlignment
A0A0A0KYS4 Uncharacterized protein5.0e-5991.6Show/hide
Query:  MSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK
        MSQ+RLFRR+I+V++K+LIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLW+LL+KHPPLSELRRK
Subjt:  MSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRK

Query:  NVESLPYADLKRFVKLDTRARIKENNSIKAK
        N ESLPYADLKRF+KLDTRARIKENNSIKAK
Subjt:  NVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A1S3B544 54S ribosomal protein L37, mitochondrial isoform X26.9e-6192.48Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A1S4DUD4 39S ribosomal protein L54, mitochondrial isoform X16.9e-6192.48Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A5D3CXE8 39S ribosomal protein L546.9e-6192.48Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        MG+SQIR FRR+I+V++KDLIQLTSVR+FAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYP WLWHLLDKHPPLSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK
        RKN ESLPYADL+RFVKLDTRARIKENNSIKAK
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAK

A0A6J1JQ61 54S ribosomal protein L37, mitochondrial-like2.6e-5285.07Show/hide
Query:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR
        M MSQIRLFRRS+ +NTKDLI+LT+VRTFAAGGK KKGSKGGAA DAPKASILSKEVKSTTVVGANILKEGADPK+MADSEYP WLW L+DK P LSELR
Subjt:  MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELR

Query:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        RK+ ++LPY DLKRFVKLDTRARIKENNS KAKN
Subjt:  RKNVESLPYADLKRFVKLDTRARIKENNSIKAKN

SwissProt top hitse value%identityAlignment
Q9CPW3 39S ribosomal protein L54, mitochondrial3.0e-0537.5Show/hide
Query:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI
        KG KGG AA+A K   + +   + TT  +G NI KEG D  + ADSEYP WL+  ++  PP  +L     ES  Y  L R   +    R+ +N  +
Subjt:  KGSKGGAAADAPK-ASILSKEVKSTT-VVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYADLKRFVKLDTRARIKENNSI

Arabidopsis top hitse value%identityAlignment
AT3G01740.1 Mitochondrial ribosomal protein L373.8e-4369.17Show/hide
Query:  MSQIRLFRRSIVVNTKDLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M++I L R S   ++KD+++    RTF AA  K+KKG KGG A+DAPK S L+KE+KSTTVVGAN LK+G+DPKI+ DS+YP WLWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIVVNTKDLIQLTSVRTF-AAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        KNVE+LPY DLKRFVKLDTR +IKENNSIKAKN
Subjt:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN

AT5G14290.1 Mitochondrial ribosomal protein L371.4e-3763.91Show/hide
Query:  MSQIRLFRRSIVVNTKDLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR
        M+ IR+F  SI   +KD+++    RTFA A GK+KK  +G    DAPKAS LSKE+KS+ VV AN LK+G DPKI+ +S++P +LWHLLDK P LSELRR
Subjt:  MSQIRLFRRSIVVNTKDLIQLTSVRTFA-AGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRR

Query:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN
        KNVE+L + DLKRFVKLDTRARIKEN+SIKAKN
Subjt:  KNVESLPYADLKRFVKLDTRARIKENNSIKAKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAAGATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAA
GGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATC
CAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCA
GATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGAGCCAAATCAGATTGTTTAGAAGGAGCATTGTTGTCAATACCAAAGATCTAATACAACTGACATCAGTACGAACATTTGCTGCCGGAGGCAAATCAAAGAA
GGGATCTAAAGGGGGTGCAGCTGCTGATGCTCCTAAAGCATCAATTCTAAGTAAAGAGGTGAAGTCTACTACTGTAGTTGGTGCTAATATTCTCAAGGAAGGTGCAGATC
CAAAAATTATGGCAGACTCAGAGTACCCTGTTTGGCTGTGGCATTTGCTTGATAAACATCCACCCCTAAGCGAACTACGAAGGAAGAATGTCGAAAGCCTTCCCTATGCA
GATCTCAAACGCTTTGTTAAATTGGATACTCGAGCAAGGATCAAGGAAAACAATTCTATTAAGGCCAAGAATTGA
Protein sequenceShow/hide protein sequence
MGMSQIRLFRRSIVVNTKDLIQLTSVRTFAAGGKSKKGSKGGAAADAPKASILSKEVKSTTVVGANILKEGADPKIMADSEYPVWLWHLLDKHPPLSELRRKNVESLPYA
DLKRFVKLDTRARIKENNSIKAKN