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Clc04G01535 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01535
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Descriptiontranscription elongation factor B polypeptide 3
Genome locationClcChr04:4603424..4603778
RNA-Seq ExpressionClc04G01535
SyntenyClc04G01535
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0070449 - elongin complex (cellular component)
GO:0003746 - translation elongation factor activity (molecular function)
InterPro domainsIPR010684 - RNA polymerase II transcription factor SIII, subunit A


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143189.1 transcription elongation factor B polypeptide 3 isoform X1 [Cucumis sativus]2.2e-1867.61Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885873.1 uncharacterized protein LOC120076176 [Benincasa hispida]6.5e-2679.73Show/hide
Query:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+VSKI SSFL++ SIN AIDSL+FLGDVG+TDL++L+ ILPHC +DQLMHIENSSKGRDLTP+TDKLWKNF
Subjt:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038885879.1 uncharacterized protein LOC120076185 [Benincasa hispida]8.7e-2374.32Show/hide
Query:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        MCE+VSKI SSFL++ SIN AID+L+FL DVG+TDL++L  ILPHC +DQL+HIENSSKGRDLT +TDKLWKNF
Subjt:  MCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900478.1 transcription elongation factor B polypeptide 3-like isoform X1 [Benincasa hispida]1.7e-1867.61Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

XP_038900481.1 transcription elongation factor B polypeptide 3-like isoform X2 [Benincasa hispida]1.7e-1867.61Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

TrEMBL top hitse value%identityAlignment
A0A0A0KGZ5 Uncharacterized protein1.1e-1867.61Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+L+FLGDVG TD++LLD ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X25.4e-1864.79Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+++FLGDVG TD++LL+ ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A5D3BGR1 Transcription elongation factor B polypeptide 3 isoform X25.4e-1864.79Show/hide
Query:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +V KI S  L  L +N+AID+++FLGDVG TD++LL+ ILPHC +DQLMH+E SS+GRDLTP+TDKLWK F
Subjt:  KVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1D807 transcription elongation factor B polypeptide 35.4e-1870.97Show/hide
Query:  LTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        L  L +N AID+L+FLGDVG TD++LL+ ILPHC +DQLMH+E SSKGRDLTP+TDKLWK F
Subjt:  LTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

A0A6J1IR58 uncharacterized protein LOC1114792522.4e-1877.19Show/hide
Query:  INRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        +N+AIDSL+FLGDVG TDLN L+ ILPHC +DQLMHIEN SKGRDLTP+T+KLWK F
Subjt:  INRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G42780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684); Has 187 Blast hits to 186 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 29; Plants - 38; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).3.0e-1345.83Show/hide
Query:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        E+++K   S L  L + +AID++K++G VG  D  LL+ IL HC ++QL HIE+++   DL+P+TDK WK F
Subjt:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF

AT2G42780.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: integral to membrane, nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II transcription factor SIII, subunit A (InterPro:IPR010684).3.0e-1345.83Show/hide
Query:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF
        E+++K   S L  L + +AID++K++G VG  D  LL+ IL HC ++QL HIE+++   DL+P+TDK WK F
Subjt:  EKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATGTGTGAAAAAGTAAGTAAAATCACTTCATCCTTCCTTACTTATCTTTCCATTAACAGAGCTATAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAATACCGA
TTTAAATCTTCTTGATCTTATTTTACCACATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGACAAATTATGGA
AAAATTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATGTGTGAAAAAGTAAGTAAAATCACTTCATCCTTCCTTACTTATCTTTCCATTAACAGAGCTATAGATAGTCTCAAGTTTCTTGGAGATGTTGGCAATACCGA
TTTAAATCTTCTTGATCTTATTTTACCACATTGTATTATTGACCAATTGATGCATATAGAGAACTCTTCCAAAGGAAGGGATCTCACACCTCTGACCGACAAATTATGGA
AAAATTTCTAA
Protein sequenceShow/hide protein sequence
MKMCEKVSKITSSFLTYLSINRAIDSLKFLGDVGNTDLNLLDLILPHCIIDQLMHIENSSKGRDLTPLTDKLWKNF