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Clc04G01565 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01565
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionMyb_DNA-bind_3 domain-containing protein
Genome locationClcChr04:4768439..4769008
RNA-Seq ExpressionClc04G01565
SyntenyClc04G01565
Gene Ontology termsGO:0010467 - gene expression (biological process)
GO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0005840 - ribosome (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]3.2e-3045.12Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV PNLES VK+LK+QY+ IAEM+ P CS F WN ERKC + E  + + WVK H +A+ L +K FP++ DL IV  +DRATG +  T  
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS
        E+GS+   + + +D++ N     E+F IP+P     P+ ED+P+TP  +   AGS  P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS

TYJ96933.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-3246.95Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV  NLESRVK LK+QY+AIA+M+ P CSRFGWN ERKC + E  +FD WVK HP+A+GL +K F ++ DL IV  +D+ATG R     
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS
        E+ S+   + + +D+  N     E+F IP+P     P+ ED+P+T +     AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]6.4e-3145.73Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV PNLES VK+LK+QY+ IAEM+ P CS F WN ERKC + E  + + WVK H +A+ L +K FP++ DL IV  +DRATG +  T  
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS
        E+GS+   + + +D++ N     E+F IP+P     P+ ED+P+TP  +   AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS

XP_008455678.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]4.4e-3246.95Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV  NLESRVK LK+QY+AIA+M+ P CSRFGWN ERKC + E  +FD WVK HP+A+GL +K F ++ DL IV  +D+ATG R     
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS
        E+ S+   + + +D+  N     E+F IP+P     P+ ED+P+T +     AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]2.7e-2948.28Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI G +IQV PNLE RVK+LK+QY+AI EM+ P CSRFGWN +RKC + E  +FD  VK HP+A+GL +K FP++ DL IV  +DRATG R  T  
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTT
        E+ S    + + +D+  N     E+F IP+P     P+ ED+ +T
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTT

TrEMBL top hitse value%identityAlignment
A0A1S3C252 uncharacterized protein At2g29880-like2.1e-3246.95Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV  NLESRVK LK+QY+AIA+M+ P CSRFGWN ERKC + E  +FD WVK HP+A+GL +K F ++ DL IV  +D+ATG R     
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS
        E+ S+   + + +D+  N     E+F IP+P     P+ ED+P+T +     AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS

A0A1U8Q7T2 uncharacterized protein LOC1046024274.6e-2743.92Show/hide
Query:  MQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAE
        M+  + GC ++ NP++ESRVK +KRQY+AI EML P CS FGW+  +KC  C+ ++F+ WVKSHP AKGLR+K FPF+D L+I+  +DRATG  V   A+
Subjt:  MQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAE

Query:  VGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVGR
               EE N   +  +S    +   P P  AS  +  +    PV R
Subjt:  VGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVGR

A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein1.5e-3045.12Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV PNLES VK+LK+QY+ IAEM+ P CS F WN ERKC + E  + + WVK H +A+ L +K FP++ DL IV  +DRATG +  T  
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS
        E+GS+   + + +D++ N     E+F IP+P     P+ ED+P+TP  +   AGS  P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS

A0A5D3BC95 Retrotransposon protein2.1e-3246.95Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV  NLESRVK LK+QY+AIA+M+ P CSRFGWN ERKC + E  +FD WVK HP+A+GL +K F ++ DL IV  +D+ATG R     
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS
        E+ S+   + + +D+  N     E+F IP+P     P+ ED+P+T +     AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVG--RGAGSSMPTRSRRS

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein3.1e-3145.73Show/hide
Query:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA
        +M++KI   +IQV PNLES VK+LK+QY+ IAEM+ P CS F WN ERKC + E  + + WVK H +A+ L +K FP++ DL IV  +DRATG +  T  
Subjt:  MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTA

Query:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS
        E+GS+   + + +D++ N     E+F IP+P     P+ ED+P+TP  +   AGSS P++ RRS
Subjt:  EVGSEPVVEEKNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTP--VGRGAGSSMPTRSRRS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G02210.1 unknown protein2.9e-0525.53Show/hide
Query:  LESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEE
        L++R K L+  + ++  +L      F W+  R+    +  ++D ++K HP ++  R KS P Y DL +V S   +      + +E  S+ +++E
Subjt:  LESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEE

AT4G02210.2 unknown protein2.9e-0525.53Show/hide
Query:  LESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEE
        L++R K L+  + ++  +L      F W+  R+    +  ++D ++K HP ++  R KS P Y DL +V S   +      + +E  S+ +++E
Subjt:  LESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEE

AT5G27260.1 unknown protein2.0e-0626.06Show/hide
Query:  SRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEEKNEDILNN
        SR+K LK QY +  + L    S FGW+   K      +++  ++K+HP+ K LR+ +F F+D+L I+  +  ATG       +  ++ +     E+    
Subjt:  SRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEEKNEDILNN

Query:  QSPYFENFYIPDPPFASSPTSEDLPTTPVGRGAGSSMPTRSR
            F+N Y  D       +    P    G      +P R R
Subjt:  QSPYFENFYIPDPPFASSPTSEDLPTTPVGRGAGSSMPTRSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGCAACAAAAAATTTCAGGGTGTTCCATACAGGTAAACCCAAATCTAGAGTCCAGGGTCAAGATGTTGAAGAGACAATACAGTGCGATCGCTGAAATGTTGTGCCC
AGGATGTAGTAGGTTTGGATGGAACGCAGAGCGAAAGTGTACTGACTGTGAGCCTAAGATATTCGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGAGGCATA
AGTCATTTCCATTTTATGATGACTTGGCGATTGTATCTAGCAAAGATAGAGCAACAGGGAGTCGTGTCACTACCACTGCTGAGGTCGGATCTGAACCTGTAGTGGAAGAG
AAGAATGAGGACATTTTAAATAACCAATCCCCATACTTTGAAAATTTTTATATTCCTGATCCACCGTTCGCCAGCTCGCCCACATCAGAAGACCTTCCAACTACCCCGGT
CGGTAGAGGGGCTGGGAGTAGCATGCCAACAAGAAGTAGGAGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGCAACAAAAAATTTCAGGGTGTTCCATACAGGTAAACCCAAATCTAGAGTCCAGGGTCAAGATGTTGAAGAGACAATACAGTGCGATCGCTGAAATGTTGTGCCC
AGGATGTAGTAGGTTTGGATGGAACGCAGAGCGAAAGTGTACTGACTGTGAGCCTAAGATATTCGATGCGTGGGTCAAGAGTCATCCGAGTGCAAAAGGACTGAGGCATA
AGTCATTTCCATTTTATGATGACTTGGCGATTGTATCTAGCAAAGATAGAGCAACAGGGAGTCGTGTCACTACCACTGCTGAGGTCGGATCTGAACCTGTAGTGGAAGAG
AAGAATGAGGACATTTTAAATAACCAATCCCCATACTTTGAAAATTTTTATATTCCTGATCCACCGTTCGCCAGCTCGCCCACATCAGAAGACCTTCCAACTACCCCGGT
CGGTAGAGGGGCTGGGAGTAGCATGCCAACAAGAAGTAGGAGATCTTGA
Protein sequenceShow/hide protein sequence
MMQQKISGCSIQVNPNLESRVKMLKRQYSAIAEMLCPGCSRFGWNAERKCTDCEPKIFDAWVKSHPSAKGLRHKSFPFYDDLAIVSSKDRATGSRVTTTAEVGSEPVVEE
KNEDILNNQSPYFENFYIPDPPFASSPTSEDLPTTPVGRGAGSSMPTRSRRS