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Clc04G01590 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01590
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAC domain-containing protein
Genome locationClcChr04:4841374..4847693
RNA-Seq ExpressionClc04G01590
SyntenyClc04G01590
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003441 - NAC domain
IPR036093 - NAC domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK12052.1 NAC domain-containing protein 83-like [Cucumis melo var. makuwa]7.3e-4443.68Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LN YVGVKF  TDQQLLHYL+ K    PYFQG++FDFDLYGGTEPW+IWQ F+ I+GEDLYFFTKLKRS  N G+L  HI+RKIGLAN 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL
        TWS   ++   F N+ +EQIIGY KRFR                                     + + NER+  +L++ E       R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL

Query:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT
          T  ++  +V  +      +   + +     +P+ TT +D++VV HVPNM  NQDN+     PLM TN ES + GT
Subjt:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT

XP_004139160.1 NAC domain-containing protein 105 [Cucumis sativus]1.2e-4344.61Show/hide
Query:  DSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANAT
        +SS G L L LNHYVG+KF  TDQQLLHYLH K Y  PYFQG+VFDFDLYGG EPW+IWQ F  I+GEDLYFFTKLKRS TN G L  H+NRKIGL N T
Subjt:  DSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANAT

Query:  WSEFTNSN--FCNDAEEQIIGYSKRFRPKTKANERSLAELQLIEH-------RVMIPEMIYNTLDMTTNQDVN------------------VVAHVLD--
        WS   +++  + N+  E+IIGY KRFR + ++ E    E  + E+       R    +  Y    M  N+ V                      H+ D  
Subjt:  WSEFTNSN--FCNDAEEQIIGYSKRFRPKTKANERSLAELQLIEH-------RVMIPEMIYNTLDMTTNQDVN------------------VVAHVLD--

Query:  -----------MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD
                    TT + +  +   P+M T QD++VV  VPNMTTNQDN           NE+TS G  D
Subjt:  -----------MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD

XP_004142192.1 NAC domain-containing protein 83 [Cucumis sativus]1.7e-4544.01Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LNHYVGVKF  TDQQLLHYLH K Y  PYFQG+VFDFDLYGG EPW+IWQ F  I+GEDLYFFTKLKRS TNSG L  HINRKIGL N 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA------------------------------------NERSLAEL-------QLIEHRVMIPEMIYNT
        TWS   +++  + N   EQIIGY KRFR + ++                                    N+R+  +L       Q  + R+ + E+  N 
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA------------------------------------NERSLAEL-------QLIEHRVMIPEMIYNT

Query:  LDMTTN---------QDVNVVAHVLDMTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD
                       Q ++  A + +   N D+       ++ T QD+ VV HVPNMTTNQDNI          NE+TS GT +
Subjt:  LDMTTN---------QDVNVVAHVLDMTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD

XP_008465646.1 PREDICTED: NAC domain-containing protein 83-like [Cucumis melo]7.3e-4443.68Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LN YVGVKF  TDQQLLHYL+ K    PYFQG++FDFDLYGGTEPW+IWQ F+ I+GEDLYFFTKLKRS  N G+L  HI+RKIGLAN 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL
        TWS   ++   F N+ +EQIIGY KRFR                                     + + NER+  +L++ E       R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL

Query:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT
          T  ++  +V  +      +   + +     +P+ TT +D++VV HVPNM  NQDN+     PLM TN ES + GT
Subjt:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT

XP_011652873.2 NAC transcription factor 56 [Cucumis sativus]1.1e-4443.26Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LNHYVGVKF  TDQQLLHYLH K Y  PYFQG+VFDFDLYGG EPW+IW+ F  I+GEDLYFFTKLKRS TNSG L  HINRKIGL N 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA-----------------------------------NERSLAELQL-------IEHRVMIPEMIYNTL
        TWS   +++  + N+ ++QIIGY KRFR + ++                                   NER+  +L++        + R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA-----------------------------------NERSLAELQL-------IEHRVMIPEMIYNTL

Query:  DMT-TNQDVNVVAHVLDMTT-------NQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD
            T +  + +  + D          N D+       +M T QD++VV ++PNMTTNQDNI          NE+ S GT D
Subjt:  DMT-TNQDVNVVAHVLDMTT-------NQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD

TrEMBL top hitse value%identityAlignment
A0A0A0KXM1 NAC domain-containing protein8.4e-4644.01Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LNHYVGVKF  TDQQLLHYLH K Y  PYFQG+VFDFDLYGG EPW+IWQ F  I+GEDLYFFTKLKRS TNSG L  HINRKIGL N 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA------------------------------------NERSLAEL-------QLIEHRVMIPEMIYNT
        TWS   +++  + N   EQIIGY KRFR + ++                                    N+R+  +L       Q  + R+ + E+  N 
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA------------------------------------NERSLAEL-------QLIEHRVMIPEMIYNT

Query:  LDMTTN---------QDVNVVAHVLDMTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD
                       Q ++  A + +   N D+       ++ T QD+ VV HVPNMTTNQDNI          NE+TS GT +
Subjt:  LDMTTN---------QDVNVVAHVLDMTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD

A0A0A0LFJ5 NAC domain-containing protein2.5e-4543.62Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LNHYVGVKF  TDQQLLHYLH K Y  PYFQG+VFDFDLYGG EPW+IWQ F  I+GEDLYFFTKLKRS TNSG L  HINRKIGL N 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA-----------------------------------NERSLAELQL-------IEHRVMIPEMIYNTL
        TWS   +++  + N+ ++QIIGY KRFR + ++                                   NER+  +L++        + R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFRPKTKA-----------------------------------NERSLAELQL-------IEHRVMIPEMIYNTL

Query:  DMT-TNQDVNVVAHVLDMTT-------NQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD
            T +  + +  + D          N D+       +M T QD++VV ++PNMTTNQDNI          NE+ S GT D
Subjt:  DMT-TNQDVNVVAHVLDMTT-------NQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTNESTSFGTSD

A0A1S3CPA2 NAC domain-containing protein 83-like3.5e-4443.68Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LN YVGVKF  TDQQLLHYL+ K    PYFQG++FDFDLYGGTEPW+IWQ F+ I+GEDLYFFTKLKRS  N G+L  HI+RKIGLAN 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL
        TWS   ++   F N+ +EQIIGY KRFR                                     + + NER+  +L++ E       R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL

Query:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT
          T  ++  +V  +      +   + +     +P+ TT +D++VV HVPNM  NQDN+     PLM TN ES + GT
Subjt:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT

A0A5A7TC54 NAC domain-containing protein 83-like3.5e-4443.68Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LN YVGVKF  TDQQLLHYL+ K    PYFQG++FDFDLYGGTEPW+IWQ F+ I+GEDLYFFTKLKRS  N G+L  HI+RKIGLAN 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL
        TWS   ++   F N+ +EQIIGY KRFR                                     + + NER+  +L++ E       R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL

Query:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT
          T  ++  +V  +      +   + +     +P+ TT +D++VV HVPNM  NQDN+     PLM TN ES + GT
Subjt:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT

A0A5D3CL63 NAC domain-containing protein 83-like3.5e-4443.68Show/hide
Query:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA
        MDSS G L L LN YVGVKF  TDQQLLHYL+ K    PYFQG++FDFDLYGGTEPW+IWQ F+ I+GEDLYFFTKLKRS  N G+L  HI+RKIGLAN 
Subjt:  MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANA

Query:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL
        TWS   ++   F N+ +EQIIGY KRFR                                     + + NER+  +L++ E       R+  P++  N  
Subjt:  TWSEFTNSN--FCNDAEEQIIGYSKRFR------------------------------------PKTKANERSLAELQLIE------HRVMIPEMIYNTL

Query:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT
          T  ++  +V  +      +   + +     +P+ TT +D++VV HVPNM  NQDN+     PLM TN ES + GT
Subjt:  DMTTNQDVNVVAHVLD----MTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLTN-ESTSFGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCAATCGGTTGTTTAACATTGTCATTGAACCATTACGTGGGCGTCAAATTTACGTCTACCGATCAGCAACTTCTTCATTATCTTCATTATAAGACTTATGA
CCTCCCGTATTTTCAAGGTAGTGTTTTCGACTTTGATCTTTATGGTGGAACCGAGCCATGGAAAATCTGGCAACTTTTTGAAGTCATTGAGGGGGAAGATCTCTACTTCT
TCACCAAACTCAAGAGATCTATAACAAACTCTGGACGTTTATTGGTGCACATTAACCGCAAGATTGGCTTGGCCAATGCCACTTGGAGTGAATTCACCAACTCCAATTTT
TGCAATGATGCTGAAGAACAAATAATCGGATATAGCAAGCGCTTTAGACCGAAGACAAAAGCAAATGAAAGAAGTTTAGCTGAGTTGCAACTGATAGAGCACAGAGTAAT
GATACCTGAGATGATCTACAACACACTTGATATGACCACTAATCAAGATGTTAATGTAGTAGCTCATGTGCTTGATATGACCACCAATCAAGATGTTAATGTAGTAGGTC
ATGTGCCTAATATGACCACTGATCAAGATGTTAATGTAGTAACCCATGTGCCTAATATGACCACTAATCAAGACAACATCGATCAACTTGACATGCCTTTAATGCTCACA
AATGAAAGCACTAGTTTTGGTACTAGTGATTCTAGTTGTGCTAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTCAATCGGTTGTTTAACATTGTCATTGAACCATTACGTGGGCGTCAAATTTACGTCTACCGATCAGCAACTTCTTCATTATCTTCATTATAAGACTTATGA
CCTCCCGTATTTTCAAGGTAGTGTTTTCGACTTTGATCTTTATGGTGGAACCGAGCCATGGAAAATCTGGCAACTTTTTGAAGTCATTGAGGGGGAAGATCTCTACTTCT
TCACCAAACTCAAGAGATCTATAACAAACTCTGGACGTTTATTGGTGCACATTAACCGCAAGATTGGCTTGGCCAATGCCACTTGGAGTGAATTCACCAACTCCAATTTT
TGCAATGATGCTGAAGAACAAATAATCGGATATAGCAAGCGCTTTAGACCGAAGACAAAAGCAAATGAAAGAAGTTTAGCTGAGTTGCAACTGATAGAGCACAGAGTAAT
GATACCTGAGATGATCTACAACACACTTGATATGACCACTAATCAAGATGTTAATGTAGTAGCTCATGTGCTTGATATGACCACCAATCAAGATGTTAATGTAGTAGGTC
ATGTGCCTAATATGACCACTGATCAAGATGTTAATGTAGTAACCCATGTGCCTAATATGACCACTAATCAAGACAACATCGATCAACTTGACATGCCTTTAATGCTCACA
AATGAAAGCACTAGTTTTGGTACTAGTGATTCTAGTTGTGCTAACTAA
Protein sequenceShow/hide protein sequence
MDSSIGCLTLSLNHYVGVKFTSTDQQLLHYLHYKTYDLPYFQGSVFDFDLYGGTEPWKIWQLFEVIEGEDLYFFTKLKRSITNSGRLLVHINRKIGLANATWSEFTNSNF
CNDAEEQIIGYSKRFRPKTKANERSLAELQLIEHRVMIPEMIYNTLDMTTNQDVNVVAHVLDMTTNQDVNVVGHVPNMTTDQDVNVVTHVPNMTTNQDNIDQLDMPLMLT
NESTSFGTSDSSCAN