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Clc04G01600 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01600
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
DescriptionCCHC-type domain-containing protein
Genome locationClcChr04:4855861..4856360
RNA-Seq ExpressionClc04G01600
SyntenyClc04G01600
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0008289 - lipid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042920.1 pol polyprotein [Cucumis melo var. makuwa]2.1e-2481.43Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVE
        +VD VSDGV DIDLCAVIS+CNMVG+SKEWWVDT ATRHICANKNMFTSY+ VS GEQLFM NS T KV+
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVE

KAA0048117.1 hypothetical protein E6C27_scaffold385G001960 [Cucumis melo var. makuwa]2.3e-2376.06Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        KVD VSDGVADIDLCAVI +CNM+G+SKEWWVDT AT HICANKN+FT Y+ +S GEQLFM +SST KV+G
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

KAA0062659.1 pol polyprotein [Cucumis melo var. makuwa]6.8e-2376.06Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSDGVADIDLCAVI +CNM+ +SKEWWVDT ATRHIC NKN+F SY+ VS GEQLFM NSST KV+G
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

KAA0066206.1 pol polyprotein [Cucumis melo var. makuwa]2.1e-2480.28Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSD +ADIDLCAVIS+CNMV  SKEWWVDT ATRHICANKNMFTSY+ VS GE+LFM NSST KVEG
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

TYK01391.1 pol polyprotein [Cucumis melo var. makuwa]5.2e-2374.65Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSDGVADID+CAV+ +CNM+G+SKEWWVDT AT HICANKN+FTSY+ V+ GEQLFM NSS  KVEG
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

TrEMBL top hitse value%identityAlignment
A0A5A7THY2 Pol polyprotein1.0e-2481.43Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVE
        +VD VSDGV DIDLCAVIS+CNMVG+SKEWWVDT ATRHICANKNMFTSY+ VS GEQLFM NS T KV+
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVE

A0A5A7U1K6 Uncharacterized protein1.1e-2376.06Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        KVD VSDGVADIDLCAVI +CNM+G+SKEWWVDT AT HICANKN+FT Y+ +S GEQLFM +SST KV+G
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

A0A5D3BN56 Pol polyprotein3.3e-2376.06Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSDGVADIDLCAVI +CNM+ +SKEWWVDT ATRHIC NKN+F SY+ VS GEQLFM NSST KV+G
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

A0A5D3BNM4 Pol polyprotein2.5e-2374.65Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSDGVADID+CAV+ +CNM+G+SKEWWVDT AT HICANKN+FTSY+ V+ GEQLFM NSS  KVEG
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

A0A5D3CTI3 Pol polyprotein1.0e-2480.28Show/hide
Query:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG
        +VD VSD +ADIDLCAVIS+CNMV  SKEWWVDT ATRHICANKNMFTSY+ VS GE+LFM NSST KVEG
Subjt:  KVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACTAGTATTTTCTTACAACTACCTCATGAGTTTTTTGGGTTCAATCGAAAAAATTGTCTTGCAAGAAGATGTCATTGACTTTTGCAAAGTTGATGCAGTATCAGA
TGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAAAATGCAACATGGTGGGGCATTCCAAGGAATGGTGGGTAGACACTAGTGCTACTCGTCATATTTGTGCCAACA
AAAATATGTTCACATCCTATTTGCCAGTTTCTGGTGGAGAACAATTATTTATGGCCAACTCTTCTACTTTAAAGGTTGAAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGAGACTAGTATTTTCTTACAACTACCTCATGAGTTTTTTGGGTTCAATCGAAAAAATTGTCTTGCAAGAAGATGTCATTGACTTTTGCAAAGTTGATGCAGTATCAGA
TGGTGTTGCAGATATTGACCTTTGTGCAGTCATTTCAAAATGCAACATGGTGGGGCATTCCAAGGAATGGTGGGTAGACACTAGTGCTACTCGTCATATTTGTGCCAACA
AAAATATGTTCACATCCTATTTGCCAGTTTCTGGTGGAGAACAATTATTTATGGCCAACTCTTCTACTTTAAAGGTTGAAGGATAA
Protein sequenceShow/hide protein sequence
MRLVFSYNYLMSFLGSIEKIVLQEDVIDFCKVDAVSDGVADIDLCAVISKCNMVGHSKEWWVDTSATRHICANKNMFTSYLPVSGGEQLFMANSSTLKVEG