; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Clc04G01616 (gene) of Watermelon (cordophanus) v2 genome

Gene IDClc04G01616
OrganismCitrullus lanatus subsp. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L35a-1-like
Genome locationClcChr04:4976201..4978081
RNA-Seq ExpressionClc04G01616
SyntenyClc04G01616
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR018266 - Ribosomal protein L35Ae, conserved site
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008442180.1 PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo]1.7e-5198.08Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

XP_011653915.1 60S ribosomal protein L35a-1 [Cucumis sativus]3.5e-5299.04Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

XP_022928725.1 60S ribosomal protein L35a-1-like [Cucurbita moschata]3.8e-5197.12Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

XP_022967923.1 60S ribosomal protein L35a-1-like [Cucurbita maxima]7.7e-5298.08Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

XP_038883794.1 60S ribosomal protein L35a-1-like [Benincasa hispida]2.7e-52100Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

TrEMBL top hitse value%identityAlignment
A0A1S3B4N4 60S ribosomal protein L35a-1-like8.4e-5298.08Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

A0A5A7TGR3 60S ribosomal protein L35a-1-like8.4e-5298.08Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

A0A6J1EL43 60S ribosomal protein L35a-1-like1.9e-5197.12Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG QGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

A0A6J1HSC2 60S ribosomal protein L35a-1-like4.6e-5095.19Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKG +GERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DK+R
Subjt:  DKIR

A0A6J1HTF7 60S ribosomal protein L35a-1-like3.8e-5298.08Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
        DKIR
Subjt:  DKIR

SwissProt top hitse value%identityAlignment
P41056 60S ribosomal protein L33-B1.0e-2252.58Show/hide
Query:  ERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIR
        E  RLYV+G  L Y+RSK    P  SLI+IEGV T +E  +Y GKR+AY+Y+A  +  G+  R +WGKV+R HGNSG+VRA F++NLP K+ G  +R
Subjt:  ERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIR

P51422 60S ribosomal protein L35a-41.6e-4784.47Show/hide
Query:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KIR
        ++R
Subjt:  KIR

Q9C912 60S ribosomal protein L35a-31.1e-4884.62Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
         ++R
Subjt:  DKIR

Q9FZH0 60S ribosomal protein L35a-21.2e-4785.44Show/hide
Query:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KIR
        ++R
Subjt:  KIR

Q9LMK0 60S ribosomal protein L35a-11.1e-4883.65Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
         ++R
Subjt:  DKIR

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein7.7e-5083.65Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
         ++R
Subjt:  DKIR

AT1G41880.1 Ribosomal protein L35Ae family protein8.5e-4985.44Show/hide
Query:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KIR
        ++R
Subjt:  KIR

AT1G74270.1 Ribosomal protein L35Ae family protein7.7e-5084.62Show/hide
Query:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMG

Query:  DKIR
         ++R
Subjt:  DKIR

AT3G55750.1 Ribosomal protein L35Ae family protein1.1e-4884.47Show/hide
Query:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGD

Query:  KIR
        ++R
Subjt:  KIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAGGGAAGGCAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACGGTCCTTGGGTACAAGAGGTCGAAGTCAAACCAATATCCAAGAACATCCCTGATCCAAAT
TGAAGGGGTGAACACTAGGGAAGAGGTGGCATGGTATGCTGGAAAGCGCTTGGCGTACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTACCGATGCATTTGGG
GCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCGAACTTGCCCCCAAAATCCATGGGTGATAAAATTAGGACAAAGGGGAAAACCATA
CATGCTGTTCATCTTGATCTTGTGATCTGCAGTATACTTGATATTGCAGAGGCTTTAATGACTATATGTGGATTGTGTTTTGTCTTTATGTATTCTTTCCATAGTGCAGG
TCTTTTCTATAGACCTGCAGTACTATCAGATGTCTTTCACTTGTCTGAAAGTACTTTTGGAGCCCTGGTTCTAACCACCTTTCTATCCTATAGTGCTCCTGTGCATTTCA
TATCAACCATTAGAAGCCAAAATTGA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAAACTATTTCGAAAGAAAATACTGAAAATAACAAGAATAACCTAACAGCAGAAACCCTAGAAGGAGTGCTTTATATCATTTTGCCCTCAAATCCCCATTATAAA
AGCTTCCTCTTCTTCAAGCGGCCACTTTCTTCTTTGAACCGCAGCTCCATCCTCCTTACTTCAACCTGCTAATCTAAGGAGTCGTTTTTCAGAACCCTAGACTGCGGCAG
CCATGGTGAAGGGAAGGCAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACGGTCCTTGGGTACAAGAGGTCGAAGTCAAACCAATATCCAAGAACATCCCTGATCCAA
ATTGAAGGGGTGAACACTAGGGAAGAGGTGGCATGGTATGCTGGAAAGCGCTTGGCGTACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTACCGATGCATTTG
GGGCAAGGTTTCCAGGCCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCGAACTTGCCCCCAAAATCCATGGGTGATAAAATTAGGACAAAGGGGAAAACCA
TACATGCTGTTCATCTTGATCTTGTGATCTGCAGTATACTTGATATTGCAGAGGCTTTAATGACTATATGTGGATTGTGTTTTGTCTTTATGTATTCTTTCCATAGTGCA
GGTCTTTTCTATAGACCTGCAGTACTATCAGATGTCTTTCACTTGTCTGAAAGTACTTTTGGAGCCCTGGTTCTAACCACCTTTCTATCCTATAGTGCTCCTGTGCATTT
CATATCAACCATTAGAAGCCAAAATTGA
Protein sequenceShow/hide protein sequence
MVKGRQGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRTKGKTI
HAVHLDLVICSILDIAEALMTICGLCFVFMYSFHSAGLFYRPAVLSDVFHLSESTFGALVLTTFLSYSAPVHFISTIRSQN